miRNA display CGI


Results 81 - 100 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 11838 0.67 0.364534
Target:  5'- gGGGC-C-CCGCGGGCgCGCGuUCGCGa -3'
miRNA:   3'- gCCCGaGcGGUGCCCG-GCGUcGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 11900 0.72 0.165578
Target:  5'- gCGcGCcCGCCGCGGGCCcggcccggccgGCGGCUGCGg -3'
miRNA:   3'- -GCcCGaGCGGUGCCCGG-----------CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 11952 0.7 0.227884
Target:  5'- gGcGGCUCGCC-CGGcGCgcgcuccagcgcaGCAGCCGCGu -3'
miRNA:   3'- gC-CCGAGCGGuGCC-CGg------------CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 12132 0.66 0.395624
Target:  5'- uGGcGCcCGCCGCc-GCgGCGGCCGCGc -3'
miRNA:   3'- gCC-CGaGCGGUGccCGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 12174 0.71 0.199179
Target:  5'- gCGGGCggcuggCGCCggaGCGGGagcacucguacgCGCGGCCGCGc -3'
miRNA:   3'- -GCCCGa-----GCGG---UGCCCg-----------GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 12201 0.67 0.387692
Target:  5'- aGcGC-CGCCGcCGGuGCCGCcGCCGCu -3'
miRNA:   3'- gCcCGaGCGGU-GCC-CGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 12326 0.75 0.099083
Target:  5'- gCGGGCgcgCGCUuggccgGCGcGGCCGCcGCCGCGg -3'
miRNA:   3'- -GCCCGa--GCGG------UGC-CCGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 12436 0.69 0.26354
Target:  5'- aGGGCUUGCgGCGucGGCCGCGuCgGCGc -3'
miRNA:   3'- gCCCGAGCGgUGC--CCGGCGUcGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 12511 0.66 0.411798
Target:  5'- cCGGGCgacCG-CGCGGGgccCCGCGccGCCGCc -3'
miRNA:   3'- -GCCCGa--GCgGUGCCC---GGCGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 12640 0.67 0.364534
Target:  5'- cCGGcGCg-GUCugGGGCCGC-GCCGg- -3'
miRNA:   3'- -GCC-CGagCGGugCCCGGCGuCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 12729 0.68 0.335174
Target:  5'- gCGGGCcCGCCggcccccuggGCGGGCCcgGCgaGGUCGUAg -3'
miRNA:   3'- -GCCCGaGCGG----------UGCCCGG--CG--UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 12784 0.69 0.281134
Target:  5'- gGGGCUCGUCGgcgagcucgucguCGGcGUCGCuGCCGUc -3'
miRNA:   3'- gCCCGAGCGGU-------------GCC-CGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 13101 0.75 0.112163
Target:  5'- gCGGGCUCgGCuCGgGGGCgucgGCGGCCGCGg -3'
miRNA:   3'- -GCCCGAG-CG-GUgCCCGg---CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 13460 0.66 0.427536
Target:  5'- aGGGCcccCGCUccucagccuggagGCGGccGCUGCGGCUGCGg -3'
miRNA:   3'- gCCCGa--GCGG-------------UGCC--CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 13554 0.67 0.379089
Target:  5'- aCGGcGCuUCGUCGaagaacuCGGaCUGCAGCCGCAc -3'
miRNA:   3'- -GCC-CG-AGCGGU-------GCCcGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 13976 0.74 0.132876
Target:  5'- gCGGGCggCGCCGCGcGGCgccugccCGCGGCgGCGg -3'
miRNA:   3'- -GCCCGa-GCGGUGC-CCG-------GCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 14136 0.68 0.335174
Target:  5'- uGGGCagUCGCuCGCGaGGaCGCuccAGCCGCGa -3'
miRNA:   3'- gCCCG--AGCG-GUGC-CCgGCG---UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 14284 0.71 0.195476
Target:  5'- gCGGGCgcugCGCUggcuguaucuaGCGGGCgCGCAccugcucggGCCGCAc -3'
miRNA:   3'- -GCCCGa---GCGG-----------UGCCCG-GCGU---------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 14443 0.71 0.209678
Target:  5'- -cGGCUCGCuCGCGGGgCGC-GCgGCGg -3'
miRNA:   3'- gcCCGAGCG-GUGCCCgGCGuCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 14749 0.69 0.26354
Target:  5'- gGGGCgaucggCGCCGCgccgcgacagggGGGCCGCc-CCGCGc -3'
miRNA:   3'- gCCCGa-----GCGGUG------------CCCGGCGucGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.