Results 81 - 100 of 919 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 11838 | 0.67 | 0.364534 |
Target: 5'- gGGGC-C-CCGCGGGCgCGCGuUCGCGa -3' miRNA: 3'- gCCCGaGcGGUGCCCG-GCGUcGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 11900 | 0.72 | 0.165578 |
Target: 5'- gCGcGCcCGCCGCGGGCCcggcccggccgGCGGCUGCGg -3' miRNA: 3'- -GCcCGaGCGGUGCCCGG-----------CGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 11952 | 0.7 | 0.227884 |
Target: 5'- gGcGGCUCGCC-CGGcGCgcgcuccagcgcaGCAGCCGCGu -3' miRNA: 3'- gC-CCGAGCGGuGCC-CGg------------CGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 12132 | 0.66 | 0.395624 |
Target: 5'- uGGcGCcCGCCGCc-GCgGCGGCCGCGc -3' miRNA: 3'- gCC-CGaGCGGUGccCGgCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 12174 | 0.71 | 0.199179 |
Target: 5'- gCGGGCggcuggCGCCggaGCGGGagcacucguacgCGCGGCCGCGc -3' miRNA: 3'- -GCCCGa-----GCGG---UGCCCg-----------GCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 12201 | 0.67 | 0.387692 |
Target: 5'- aGcGC-CGCCGcCGGuGCCGCcGCCGCu -3' miRNA: 3'- gCcCGaGCGGU-GCC-CGGCGuCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 12326 | 0.75 | 0.099083 |
Target: 5'- gCGGGCgcgCGCUuggccgGCGcGGCCGCcGCCGCGg -3' miRNA: 3'- -GCCCGa--GCGG------UGC-CCGGCGuCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 12436 | 0.69 | 0.26354 |
Target: 5'- aGGGCUUGCgGCGucGGCCGCGuCgGCGc -3' miRNA: 3'- gCCCGAGCGgUGC--CCGGCGUcGgCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 12511 | 0.66 | 0.411798 |
Target: 5'- cCGGGCgacCG-CGCGGGgccCCGCGccGCCGCc -3' miRNA: 3'- -GCCCGa--GCgGUGCCC---GGCGU--CGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 12640 | 0.67 | 0.364534 |
Target: 5'- cCGGcGCg-GUCugGGGCCGC-GCCGg- -3' miRNA: 3'- -GCC-CGagCGGugCCCGGCGuCGGCgu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 12729 | 0.68 | 0.335174 |
Target: 5'- gCGGGCcCGCCggcccccuggGCGGGCCcgGCgaGGUCGUAg -3' miRNA: 3'- -GCCCGaGCGG----------UGCCCGG--CG--UCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 12784 | 0.69 | 0.281134 |
Target: 5'- gGGGCUCGUCGgcgagcucgucguCGGcGUCGCuGCCGUc -3' miRNA: 3'- gCCCGAGCGGU-------------GCC-CGGCGuCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 13101 | 0.75 | 0.112163 |
Target: 5'- gCGGGCUCgGCuCGgGGGCgucgGCGGCCGCGg -3' miRNA: 3'- -GCCCGAG-CG-GUgCCCGg---CGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 13460 | 0.66 | 0.427536 |
Target: 5'- aGGGCcccCGCUccucagccuggagGCGGccGCUGCGGCUGCGg -3' miRNA: 3'- gCCCGa--GCGG-------------UGCC--CGGCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 13554 | 0.67 | 0.379089 |
Target: 5'- aCGGcGCuUCGUCGaagaacuCGGaCUGCAGCCGCAc -3' miRNA: 3'- -GCC-CG-AGCGGU-------GCCcGGCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 13976 | 0.74 | 0.132876 |
Target: 5'- gCGGGCggCGCCGCGcGGCgccugccCGCGGCgGCGg -3' miRNA: 3'- -GCCCGa-GCGGUGC-CCG-------GCGUCGgCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 14136 | 0.68 | 0.335174 |
Target: 5'- uGGGCagUCGCuCGCGaGGaCGCuccAGCCGCGa -3' miRNA: 3'- gCCCG--AGCG-GUGC-CCgGCG---UCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 14284 | 0.71 | 0.195476 |
Target: 5'- gCGGGCgcugCGCUggcuguaucuaGCGGGCgCGCAccugcucggGCCGCAc -3' miRNA: 3'- -GCCCGa---GCGG-----------UGCCCG-GCGU---------CGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 14443 | 0.71 | 0.209678 |
Target: 5'- -cGGCUCGCuCGCGGGgCGC-GCgGCGg -3' miRNA: 3'- gcCCGAGCG-GUGCCCgGCGuCGgCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 14749 | 0.69 | 0.26354 |
Target: 5'- gGGGCgaucggCGCCGCgccgcgacagggGGGCCGCc-CCGCGc -3' miRNA: 3'- gCCCGa-----GCGGUG------------CCCGGCGucGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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