miRNA display CGI


Results 61 - 80 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 7040 0.75 0.104133
Target:  5'- gGcGGCgaccgCGCCGCGGG-CGUAGCCGCu -3'
miRNA:   3'- gC-CCGa----GCGGUGCCCgGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 7437 0.66 0.398826
Target:  5'- uGGGCgUCGUCcgcggugcggccagcGCGGGgCGCcAGCUGCu -3'
miRNA:   3'- gCCCG-AGCGG---------------UGCCCgGCG-UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 7570 0.66 0.436809
Target:  5'- gGGGCUCGCCGa-GGa-GCAGCgCGUc -3'
miRNA:   3'- gCCCGAGCGGUgcCCggCGUCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 7665 0.66 0.395624
Target:  5'- gCGGcGCUucCGCCcgGCGGGCCGCccAGCagauaaaaCGCGa -3'
miRNA:   3'- -GCC-CGA--GCGG--UGCCCGGCG--UCG--------GCGU- -5'
23567 5' -66.4 NC_005261.1 + 7748 0.71 0.186482
Target:  5'- gGGGCccUCGCCGCcgaGGcacGCCGCgAGCCGCu -3'
miRNA:   3'- gCCCG--AGCGGUG---CC---CGGCG-UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 7912 0.74 0.126844
Target:  5'- cCGGGC-CGuCCAUGGcGCUGCAGCgGCu -3'
miRNA:   3'- -GCCCGaGC-GGUGCC-CGGCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 8118 0.69 0.275576
Target:  5'- gGcGGCUCGCCAa-GG-CGCAGUCGCu -3'
miRNA:   3'- gC-CCGAGCGGUgcCCgGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 8497 0.68 0.314313
Target:  5'- cCGGGCccCGCCGCcccugccGCUGCAGCCgGCGg -3'
miRNA:   3'- -GCCCGa-GCGGUGcc-----CGGCGUCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 8968 0.67 0.364534
Target:  5'- gGGGCUUGUCGgGaaGGCuCGCGGUCGUu -3'
miRNA:   3'- gCCCGAGCGGUgC--CCG-GCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 9199 0.74 0.129987
Target:  5'- uGGGCgucUGCCGCGuaGGCUacggGCAGCCGCAc -3'
miRNA:   3'- gCCCGa--GCGGUGC--CCGG----CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 9389 0.67 0.342349
Target:  5'- gGGGCacCGUgGCGGccaGCCGCgcgagcgucAGCCGCAg -3'
miRNA:   3'- gCCCGa-GCGgUGCC---CGGCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 9430 0.66 0.436809
Target:  5'- gCGaGCccCGCCGCGGGCC-CGGgCGCc -3'
miRNA:   3'- -GCcCGa-GCGGUGCCCGGcGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 9671 0.67 0.372146
Target:  5'- cCGGGCcccagagCGCCAgcgaguCGGGuUCGCAGCaGCAc -3'
miRNA:   3'- -GCCCGa------GCGGU------GCCC-GGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 10218 0.7 0.234781
Target:  5'- aGGGCccgCGCCugcccagGCGGGcCCGCGcacucgccGCCGCGg -3'
miRNA:   3'- gCCCGa--GCGG-------UGCCC-GGCGU--------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 10428 0.66 0.428375
Target:  5'- gCGGcccGC-CGCCGCGGcGCCGgcccGCCGCu -3'
miRNA:   3'- -GCC---CGaGCGGUGCC-CGGCgu--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 10467 0.7 0.240753
Target:  5'- cCGGGCgucuucgcgccCGCCGCGGcCCGCucccGCCGCc -3'
miRNA:   3'- -GCCCGa----------GCGGUGCCcGGCGu---CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 10508 0.69 0.257684
Target:  5'- gCGcGGC-CGCCgcuGCGGGCCccGCGGCgCGCu -3'
miRNA:   3'- -GC-CCGaGCGG---UGCCCGG--CGUCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 10544 0.7 0.22476
Target:  5'- cCGGcGC-CGCCG-GGGCaGCGGCCGCc -3'
miRNA:   3'- -GCC-CGaGCGGUgCCCGgCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 10952 0.66 0.411798
Target:  5'- aGGGCUgccccCGCgGCGGGCgGgcccGCCGUAg -3'
miRNA:   3'- gCCCGA-----GCGgUGCCCGgCgu--CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 11653 0.67 0.372146
Target:  5'- uGGGCUacUGCCGCGcGCUGCuGCaGCAu -3'
miRNA:   3'- gCCCGA--GCGGUGCcCGGCGuCGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.