miRNA display CGI


Results 41 - 60 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 3996 0.7 0.235319
Target:  5'- aGGGCgcgugCGCCACGccgacGCUGcCGGCCGCc -3'
miRNA:   3'- gCCCGa----GCGGUGCc----CGGC-GUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 4008 0.67 0.387692
Target:  5'- gGcGGCUCaugGCCACGcaGGCCGCcacguGCgGCAg -3'
miRNA:   3'- gC-CCGAG---CGGUGC--CCGGCGu----CGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 4188 0.67 0.342349
Target:  5'- aCGGGC-CGUgGCcGGCCaUGGCCGCGa -3'
miRNA:   3'- -GCCCGaGCGgUGcCCGGcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 4305 0.7 0.219632
Target:  5'- cCGcGGC-CGCCGCGuaGCgCGCGGCCGCc -3'
miRNA:   3'- -GC-CCGaGCGGUGCc-CG-GCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 4351 0.66 0.403659
Target:  5'- gCGGGCUUGCgCAgaccacagguaGGcGCgGCAGUCGCGc -3'
miRNA:   3'- -GCCCGAGCG-GUg----------CC-CGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 4421 0.69 0.261772
Target:  5'- cCGGGCcaggccUCGCCggagggcgucagcaGCGGGCCcuccaGCGGCgGCGg -3'
miRNA:   3'- -GCCCG------AGCGG--------------UGCCCGG-----CGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 4488 0.69 0.269504
Target:  5'- cCGcGGCguaGCCugcGCGGGCCcCAGUCGCGc -3'
miRNA:   3'- -GC-CCGag-CGG---UGCCCGGcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 4830 0.67 0.349634
Target:  5'- uGGGCgcagGCgGCGGcGuCCGC-GCCGCAg -3'
miRNA:   3'- gCCCGag--CGgUGCC-C-GGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 4832 0.71 0.209678
Target:  5'- gCGGGcCUUGUUuuGGGCCGCgcgcccgugGGCCGCGc -3'
miRNA:   3'- -GCCC-GAGCGGugCCCGGCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 4865 0.75 0.099083
Target:  5'- aGGGCggcgGCCACGacGGCCGCcucAGCCGCGg -3'
miRNA:   3'- gCCCGag--CGGUGC--CCGGCG---UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 4905 0.7 0.22476
Target:  5'- -cGGCUUcgGCgGCGGcugccuccGCCGCGGCCGCGa -3'
miRNA:   3'- gcCCGAG--CGgUGCC--------CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 5139 0.68 0.300959
Target:  5'- cCGGcGCUCGCgCgccucggcccgGCGGGCCGCgucgagcagGGCCGgGu -3'
miRNA:   3'- -GCC-CGAGCG-G-----------UGCCCGGCG---------UCGGCgU- -5'
23567 5' -66.4 NC_005261.1 + 5195 0.66 0.436809
Target:  5'- cCGGGCcCcCCucCGGGCCGaGGuCCGCGg -3'
miRNA:   3'- -GCCCGaGcGGu-GCCCGGCgUC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 5269 0.69 0.26354
Target:  5'- cCGGGagaCGCCAUGgccGGCCGCGGUgCGCGc -3'
miRNA:   3'- -GCCCga-GCGGUGC---CCGGCGUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 5411 0.67 0.347437
Target:  5'- gCGGGCgccgCGaacgaaggagacgaCCGC-GGCCGCGGCgGCGg -3'
miRNA:   3'- -GCCCGa---GC--------------GGUGcCCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 5642 0.76 0.09403
Target:  5'- cCGGGCcgggCGuCCGCGGGCgcgccgacgucuuCGCAGCCGUAc -3'
miRNA:   3'- -GCCCGa---GC-GGUGCCCG-------------GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 6338 0.7 0.219632
Target:  5'- gCGGGUgcgCGCCgucGCGugcGGCgGCGGCCGCc -3'
miRNA:   3'- -GCCCGa--GCGG---UGC---CCGgCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 6445 0.68 0.307581
Target:  5'- gCGGGCgcggCGUCG-GGGCC-CAGCgGCGc -3'
miRNA:   3'- -GCCCGa---GCGGUgCCCGGcGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 6659 0.66 0.428375
Target:  5'- -cGGC-CGUCGCGGGggGCAGCCGg- -3'
miRNA:   3'- gcCCGaGCGGUGCCCggCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 6808 0.67 0.342349
Target:  5'- gGGGCgccggCGCCGCu-GCCgGCAGCgGCGg -3'
miRNA:   3'- gCCCGa----GCGGUGccCGG-CGUCGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.