miRNA display CGI


Results 41 - 60 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 134111 0.66 0.436809
Target:  5'- aGGGCU-GCCG-GGGCCaCAGCuCGUu -3'
miRNA:   3'- gCCCGAgCGGUgCCCGGcGUCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 133934 0.75 0.104133
Target:  5'- aCGcGGCg-GCCGCGGGgcCCGCGGCCGUg -3'
miRNA:   3'- -GC-CCGagCGGUGCCC--GGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 133805 0.67 0.349634
Target:  5'- cCGGGCUgcucgacgGCgACGaGGCgcugCGCGGCCGCGu -3'
miRNA:   3'- -GCCCGAg-------CGgUGC-CCG----GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 133760 0.78 0.064618
Target:  5'- cCGcGGCgccgCGCgACGGGCCGCcGCCGCu -3'
miRNA:   3'- -GC-CCGa---GCGgUGCCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 133698 0.67 0.349634
Target:  5'- aGGGCccggcgcccUCGCCGCGGcGcCCGCgcgGGgCGCGa -3'
miRNA:   3'- gCCCG---------AGCGGUGCC-C-GGCG---UCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 133617 0.66 0.411798
Target:  5'- uCGcGCUggCGCUGUGGGCCGCGcucGCCGCGc -3'
miRNA:   3'- -GCcCGA--GCGGUGCCCGGCGU---CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 133568 0.73 0.13985
Target:  5'- gGGGC-CGCCGCc-GCCGCGGCCGaCAc -3'
miRNA:   3'- gCCCGaGCGGUGccCGGCGUCGGC-GU- -5'
23567 5' -66.4 NC_005261.1 + 133367 0.69 0.27192
Target:  5'- aGGGCUucggcugccugcgcgCGgcCCACGGGCgCGCGGCC-CAa -3'
miRNA:   3'- gCCCGA---------------GC--GGUGCCCG-GCGUCGGcGU- -5'
23567 5' -66.4 NC_005261.1 + 133295 0.78 0.061419
Target:  5'- uGGGCcgCGgCGCGGGCgcuCGCGGCCGCGg -3'
miRNA:   3'- gCCCGa-GCgGUGCCCG---GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 133090 0.7 0.233174
Target:  5'- cCGGGCcgaggcgcgcgagCGCCgGCGGGCCGC--CCGCGc -3'
miRNA:   3'- -GCCCGa------------GCGG-UGCCCGGCGucGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 133030 0.66 0.395624
Target:  5'- gCGGGCgCGCCACcGcGCaCGCAcguGCUGCGc -3'
miRNA:   3'- -GCCCGaGCGGUGcC-CG-GCGU---CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 132898 0.71 0.214606
Target:  5'- cCGGGC--GCCGCGGGCgGCgccgAGCgGCGg -3'
miRNA:   3'- -GCCCGagCGGUGCCCGgCG----UCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 132787 0.74 0.120769
Target:  5'- gGGGCgcugUUGCCGCc-GCCGCGGCCGCGg -3'
miRNA:   3'- gCCCG----AGCGGUGccCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 132720 0.7 0.219632
Target:  5'- gCGGcCUCGCCGCcGuGCCGCGGCCcCAg -3'
miRNA:   3'- -GCCcGAGCGGUGcC-CGGCGUCGGcGU- -5'
23567 5' -66.4 NC_005261.1 + 132690 0.66 0.436809
Target:  5'- uGGGCUU-CCGCGuGGCCGUGcCCGUc -3'
miRNA:   3'- gCCCGAGcGGUGC-CCGGCGUcGGCGu -5'
23567 5' -66.4 NC_005261.1 + 132624 0.7 0.223726
Target:  5'- gGGGCgcuggCGCCgaggacGCGGGCgcggcggcccuaGCGGCCGCGu -3'
miRNA:   3'- gCCCGa----GCGG------UGCCCGg-----------CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 132230 0.67 0.379866
Target:  5'- cCGGaGCccUCGCCGCGGGaggaGCGGagaCGCGc -3'
miRNA:   3'- -GCC-CG--AGCGGUGCCCgg--CGUCg--GCGU- -5'
23567 5' -66.4 NC_005261.1 + 132020 0.66 0.411798
Target:  5'- uGGGCcgcCGUCACGGa-CGUGGCCGCc -3'
miRNA:   3'- gCCCGa--GCGGUGCCcgGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 131965 0.7 0.235319
Target:  5'- cCGGGUggagcUGCCGCGcGGCCaccaggccuucGCAGUCGCGg -3'
miRNA:   3'- -GCCCGa----GCGGUGC-CCGG-----------CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 131919 0.73 0.146802
Target:  5'- aCGGGCUuuuuggCGCgCGCGGGaCCGCGGugcCCGCGc -3'
miRNA:   3'- -GCCCGA------GCG-GUGCCC-GGCGUC---GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.