miRNA display CGI


Results 21 - 40 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 136386 0.67 0.387692
Target:  5'- uCGGGCccggCGCCuucGCGcGcGCCGaGGCCGCu -3'
miRNA:   3'- -GCCCGa---GCGG---UGC-C-CGGCgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 136191 0.73 0.157822
Target:  5'- uGcGGCUgGCCGCGGcGCgGCGGCgGCu -3'
miRNA:   3'- gC-CCGAgCGGUGCC-CGgCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 135832 0.68 0.335174
Target:  5'- gGGGC---CCGCGGGCgCGCucGCCGCc -3'
miRNA:   3'- gCCCGagcGGUGCCCG-GCGu-CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 135798 0.66 0.411798
Target:  5'- aGGcGCUgGCCgagaucGCGGcCCGCcGCCGCGc -3'
miRNA:   3'- gCC-CGAgCGG------UGCCcGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 135478 0.66 0.436809
Target:  5'- uCGaGGCcCGCCGCGacggcccGCCGCGG-CGCAa -3'
miRNA:   3'- -GC-CCGaGCGGUGCc------CGGCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 135393 0.67 0.382984
Target:  5'- gGGGC-CGCCggcccugccgcccgaGCucGGGCUGgGGCCGCc -3'
miRNA:   3'- gCCCGaGCGG---------------UG--CCCGGCgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 135366 0.66 0.435962
Target:  5'- aGGGC-CGCCGCgucaccuGGGagaCGCucaugguccacGGCCGCGa -3'
miRNA:   3'- gCCCGaGCGGUG-------CCCg--GCG-----------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 135276 0.7 0.22476
Target:  5'- cCGGGCccuaGUC-CGGGCCGgagccCGGCCGCGg -3'
miRNA:   3'- -GCCCGag--CGGuGCCCGGC-----GUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 135085 0.69 0.257684
Target:  5'- gCGGGCUCGCgGCccGGCgGCGGagCGCGa -3'
miRNA:   3'- -GCCCGAGCGgUGc-CCGgCGUCg-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 134999 0.78 0.066277
Target:  5'- gGGGCgccccuggCGCgGCGGGCCcgcacGCGGCCGCGg -3'
miRNA:   3'- gCCCGa-------GCGgUGCCCGG-----CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 134839 0.66 0.436809
Target:  5'- -cGGCggaagUGCCgGCGcGGCUgGCGGCCGCGc -3'
miRNA:   3'- gcCCGa----GCGG-UGC-CCGG-CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 134708 0.67 0.387692
Target:  5'- cCGaGGCggcCGCCGCGcuGGa-GCGGCCGCGc -3'
miRNA:   3'- -GC-CCGa--GCGGUGC--CCggCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 134663 0.68 0.307581
Target:  5'- uGGaGCgcgcgCGCCuuaGCGGcGCCGCGcccGCCGCGc -3'
miRNA:   3'- gCC-CGa----GCGG---UGCC-CGGCGU---CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 134539 0.74 0.123772
Target:  5'- cCGGuGCUCucgGCUgcaGCGGGCCGCGGCCuGCc -3'
miRNA:   3'- -GCC-CGAG---CGG---UGCCCGGCGUCGG-CGu -5'
23567 5' -66.4 NC_005261.1 + 134537 0.7 0.21761
Target:  5'- uGGGCgcgcagacgugacCGCCccuugcuggGCGGcGCCGCGGCUGCGc -3'
miRNA:   3'- gCCCGa------------GCGG---------UGCC-CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 134369 0.7 0.229988
Target:  5'- cCGuGCUCGCCGgccgcgcggcgcCGGcGCCGCuGCCGCc -3'
miRNA:   3'- -GCcCGAGCGGU------------GCC-CGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 134335 0.7 0.240753
Target:  5'- gCGGGCgcccgCGCCGCGcucGCCG-AGCUGCGc -3'
miRNA:   3'- -GCCCGa----GCGGUGCc--CGGCgUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 134200 0.75 0.101578
Target:  5'- gCGcGGCUCgGCgCGCGGGUCGCGGCgGCc -3'
miRNA:   3'- -GC-CCGAG-CG-GUGCCCGGCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 134144 0.66 0.403659
Target:  5'- uGGGCUgcgccuggCGCCACccgGGGCUGCugcucccGCUGCu -3'
miRNA:   3'- gCCCGA--------GCGGUG---CCCGGCGu------CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 134141 0.7 0.22476
Target:  5'- cCGGGagCGUgACGGcGCCGCuGCCGCc -3'
miRNA:   3'- -GCCCgaGCGgUGCC-CGGCGuCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.