Results 21 - 40 of 919 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 107889 | 0.76 | 0.094265 |
Target: 5'- aGGGC-CGCgaGCGcGGCCGcCAGCCGCGc -3' miRNA: 3'- gCCCGaGCGg-UGC-CCGGC-GUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 5642 | 0.76 | 0.09403 |
Target: 5'- cCGGGCcgggCGuCCGCGGGCgcgccgacgucuuCGCAGCCGUAc -3' miRNA: 3'- -GCCCGa---GC-GGUGCCCG-------------GCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 99614 | 0.78 | 0.061263 |
Target: 5'- gCGGGCUCgGCCGCGGccaacacccgccaGCCGCGGgCCGCc -3' miRNA: 3'- -GCCCGAG-CGGUGCC-------------CGGCGUC-GGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 20545 | 0.79 | 0.056905 |
Target: 5'- aGGGCcggccUCGCCGCGGGCC-CGGCCGg- -3' miRNA: 3'- gCCCG-----AGCGGUGCCCGGcGUCGGCgu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 84512 | 0.79 | 0.055473 |
Target: 5'- gCGGGCgCGCCGCagcuGGCCGCGGCgCGCGg -3' miRNA: 3'- -GCCCGaGCGGUGc---CCGGCGUCG-GCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 28583 | 0.79 | 0.054077 |
Target: 5'- uCGGGUUaggUGUCugGGGCgGCGGCCGCAa -3' miRNA: 3'- -GCCCGA---GCGGugCCCGgCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 3531 | 0.79 | 0.052714 |
Target: 5'- uGGGCgCGCCGC-GGUCGCAGUCGCAg -3' miRNA: 3'- gCCCGaGCGGUGcCCGGCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 137884 | 0.8 | 0.046387 |
Target: 5'- cCGGGCcgCGCCgggcuGCGGGCCGCcgcAGCCGCc -3' miRNA: 3'- -GCCCGa-GCGG-----UGCCCGGCG---UCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 213 | 0.8 | 0.046387 |
Target: 5'- cCGGGCcgCGCCgggcuGCGGGCCGCcgcAGCCGCc -3' miRNA: 3'- -GCCCGa-GCGG-----UGCCCGGCG---UCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 126289 | 0.82 | 0.02995 |
Target: 5'- cCGGGCgagcCGCCGCGGcgcgggccGCCGCAGCCGCc -3' miRNA: 3'- -GCCCGa---GCGGUGCC--------CGGCGUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 133295 | 0.78 | 0.061419 |
Target: 5'- uGGGCcgCGgCGCGGGCgcuCGCGGCCGCGg -3' miRNA: 3'- gCCCGa-GCgGUGCCCG---GCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 133760 | 0.78 | 0.064618 |
Target: 5'- cCGcGGCgccgCGCgACGGGCCGCcGCCGCu -3' miRNA: 3'- -GC-CCGa---GCGgUGCCCGGCGuCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 102312 | 0.76 | 0.09194 |
Target: 5'- uGGGCUgCgGCgCugGGGCCGCGcuGCCGCGg -3' miRNA: 3'- gCCCGA-G-CG-GugCCCGGCGU--CGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 26605 | 0.76 | 0.085288 |
Target: 5'- gCGGGCggcggCGgCACGGcGCCGCAGCC-CAg -3' miRNA: 3'- -GCCCGa----GCgGUGCC-CGGCGUCGGcGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 75211 | 0.77 | 0.08111 |
Target: 5'- gCGGGCgccggCGCCcgcGCGGG-CGCGGCCGCc -3' miRNA: 3'- -GCCCGa----GCGG---UGCCCgGCGUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 127702 | 0.77 | 0.077129 |
Target: 5'- gGGGCgacagcgagcgCGCCGCGGGgcCCGCAGCgGCGg -3' miRNA: 3'- gCCCGa----------GCGGUGCCC--GGCGUCGgCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 96608 | 0.77 | 0.075209 |
Target: 5'- -aGG-UCGCCGaGGGCCGCAGCCGCu -3' miRNA: 3'- gcCCgAGCGGUgCCCGGCGUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 102551 | 0.77 | 0.075209 |
Target: 5'- gGGGCUCGCCgGCgGGGgUGCGGCCgGCAg -3' miRNA: 3'- gCCCGAGCGG-UG-CCCgGCGUCGG-CGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 20145 | 0.77 | 0.073335 |
Target: 5'- gCGGGC-CGCCagcagacgaGCGcGGCUGCGGCCGCu -3' miRNA: 3'- -GCCCGaGCGG---------UGC-CCGGCGUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 123862 | 0.78 | 0.066277 |
Target: 5'- gCGGGCcaccgCGCCGCcccGGCCGCGGCUGCu -3' miRNA: 3'- -GCCCGa----GCGGUGc--CCGGCGUCGGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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