miRNA display CGI


Results 21 - 40 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 105112 0.79 0.055473
Target:  5'- gGGGCUUGCCcgcgcgggcGCGGGCCGCcGGCgCGCGc -3'
miRNA:   3'- gCCCGAGCGG---------UGCCCGGCG-UCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 20545 0.79 0.056905
Target:  5'- aGGGCcggccUCGCCGCGGGCC-CGGCCGg- -3'
miRNA:   3'- gCCCG-----AGCGGUGCCCGGcGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 99614 0.78 0.061263
Target:  5'- gCGGGCUCgGCCGCGGccaacacccgccaGCCGCGGgCCGCc -3'
miRNA:   3'- -GCCCGAG-CGGUGCC-------------CGGCGUC-GGCGu -5'
23567 5' -66.4 NC_005261.1 + 28778 0.78 0.061419
Target:  5'- uGGGCcgCGgCGCGGGCgcuCGCGGCCGCGg -3'
miRNA:   3'- gCCCGa-GCgGUGCCCG---GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 133295 0.78 0.061419
Target:  5'- uGGGCcgCGgCGCGGGCgcuCGCGGCCGCGg -3'
miRNA:   3'- gCCCGa-GCgGUGCCCG---GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 122347 0.78 0.061419
Target:  5'- aGaGCUCGCCugGcGGCCGCGGCuCGCGc -3'
miRNA:   3'- gCcCGAGCGGugC-CCGGCGUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 59009 0.78 0.063642
Target:  5'- cCGGGCUCGCCcaGCGGcGCCGCcaggaacgggugccGCCGCGc -3'
miRNA:   3'- -GCCCGAGCGG--UGCC-CGGCGu-------------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 29243 0.78 0.064618
Target:  5'- cCGcGGCgccgCGCgACGGGCCGCcGCCGCu -3'
miRNA:   3'- -GC-CCGa---GCGgUGCCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 133760 0.78 0.064618
Target:  5'- cCGcGGCgccgCGCgACGGGCCGCcGCCGCu -3'
miRNA:   3'- -GC-CCGa---GCGgUGCCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 123862 0.78 0.066277
Target:  5'- gCGGGCcaccgCGCCGCcccGGCCGCGGCUGCu -3'
miRNA:   3'- -GCCCGa----GCGGUGc--CCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 134999 0.78 0.066277
Target:  5'- gGGGCgccccuggCGCgGCGGGCCcgcacGCGGCCGCGg -3'
miRNA:   3'- gCCCGa-------GCGgUGCCCGG-----CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 49079 0.78 0.066277
Target:  5'- gCGGGCacgCGCCGCGGGcCCGCugAGCgCGCGc -3'
miRNA:   3'- -GCCCGa--GCGGUGCCC-GGCG--UCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 127798 0.78 0.066277
Target:  5'- gCGGGCcggCGCCgcggcgGCGGGCCGCucgcgcucgcGGCCGCGa -3'
miRNA:   3'- -GCCCGa--GCGG------UGCCCGGCG----------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 109020 0.77 0.071505
Target:  5'- cCGGGCcgaaCGCCGcCGuGGCgCGCAGCCGCGc -3'
miRNA:   3'- -GCCCGa---GCGGU-GC-CCG-GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 20145 0.77 0.073335
Target:  5'- gCGGGC-CGCCagcagacgaGCGcGGCUGCGGCCGCu -3'
miRNA:   3'- -GCCCGaGCGG---------UGC-CCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 102551 0.77 0.075209
Target:  5'- gGGGCUCGCCgGCgGGGgUGCGGCCgGCAg -3'
miRNA:   3'- gCCCGAGCGG-UG-CCCgGCGUCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 96608 0.77 0.075209
Target:  5'- -aGG-UCGCCGaGGGCCGCAGCCGCu -3'
miRNA:   3'- gcCCgAGCGGUgCCCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 118393 0.77 0.077129
Target:  5'- aGGcGCUggcgGCCGCGGgcGCCGCAGCCGCGc -3'
miRNA:   3'- gCC-CGAg---CGGUGCC--CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 23184 0.77 0.077129
Target:  5'- gGGGCgacagcgagcgCGCCGCGGGgcCCGCAGCgGCGg -3'
miRNA:   3'- gCCCGa----------GCGGUGCCC--GGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 127702 0.77 0.077129
Target:  5'- gGGGCgacagcgagcgCGCCGCGGGgcCCGCAGCgGCGg -3'
miRNA:   3'- gCCCGa----------GCGGUGCCC--GGCGUCGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.