miRNA display CGI


Results 21 - 40 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 106223 0.66 0.436809
Target:  5'- cCGcGGC-CGCCugGcGCgGCcGCCGCGc -3'
miRNA:   3'- -GC-CCGaGCGGugCcCGgCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 135478 0.66 0.436809
Target:  5'- uCGaGGCcCGCCGCGacggcccGCCGCGG-CGCAa -3'
miRNA:   3'- -GC-CCGaGCGGUGCc------CGGCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 134839 0.66 0.436809
Target:  5'- -cGGCggaagUGCCgGCGcGGCUgGCGGCCGCGc -3'
miRNA:   3'- gcCCGa----GCGG-UGC-CCGG-CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 40458 0.66 0.436809
Target:  5'- gGGGCUCGggagucgaUGCcGGCCGC-GCCGCc -3'
miRNA:   3'- gCCCGAGCg-------GUGcCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 118262 0.66 0.436809
Target:  5'- aGGGCg-GUCGCu-GCCGCAGCCGa- -3'
miRNA:   3'- gCCCGagCGGUGccCGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 5195 0.66 0.436809
Target:  5'- cCGGGCcCcCCucCGGGCCGaGGuCCGCGg -3'
miRNA:   3'- -GCCCGaGcGGu-GCCCGGCgUC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 126467 0.66 0.436809
Target:  5'- gCGcGCUCGCCucGCGGuaguaccgcGCCGCcaccagcuGCCGCAg -3'
miRNA:   3'- -GCcCGAGCGG--UGCC---------CGGCGu-------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 109613 0.66 0.436809
Target:  5'- cCGcGCUCGCCAgCGcuauaaaggcGGCuUGCGGCCGCc -3'
miRNA:   3'- -GCcCGAGCGGU-GC----------CCG-GCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 54380 0.66 0.436809
Target:  5'- -cGGCccaGCCcaGCGGgGCCGCGGcCCGCc -3'
miRNA:   3'- gcCCGag-CGG--UGCC-CGGCGUC-GGCGu -5'
23567 5' -66.4 NC_005261.1 + 78215 0.66 0.436809
Target:  5'- cCGuGGCUggccUGCCGCucGCUcaGCAGCCGCAg -3'
miRNA:   3'- -GC-CCGA----GCGGUGccCGG--CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 83039 0.66 0.436809
Target:  5'- aGGGCcgcUCGCCGCGGGagggggcuccCUGCGcgcccCCGCGg -3'
miRNA:   3'- gCCCG---AGCGGUGCCC----------GGCGUc----GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 132690 0.66 0.436809
Target:  5'- uGGGCUU-CCGCGuGGCCGUGcCCGUc -3'
miRNA:   3'- gCCCGAGcGGUGC-CCGGCGUcGGCGu -5'
23567 5' -66.4 NC_005261.1 + 135366 0.66 0.435962
Target:  5'- aGGGC-CGCCGCgucaccuGGGagaCGCucaugguccacGGCCGCGa -3'
miRNA:   3'- gCCCGaGCGGUG-------CCCg--GCG-----------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 77543 0.66 0.433424
Target:  5'- cCGGGCUgG-UACGGcGCCGCcgccaguggcgccGCCGCGc -3'
miRNA:   3'- -GCCCGAgCgGUGCC-CGGCGu------------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 106037 0.66 0.43258
Target:  5'- uCGGGCgccagcuccagcgcgCGCCGCccGcaggccagguacaccGGCCGCAGCgGCGc -3'
miRNA:   3'- -GCCCGa--------------GCGGUG--C---------------CCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 1520 0.66 0.43258
Target:  5'- uCGGGCgccagcuccagcgcgCGCCGCccGcaggccagguacaccGGCCGCAGCgGCGc -3'
miRNA:   3'- -GCCCGa--------------GCGGUG--C---------------CCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 83222 0.66 0.428375
Target:  5'- aCGGGagcgUCGUugugCACGaGGCCGCcggcguGGCCGUAa -3'
miRNA:   3'- -GCCCg---AGCG----GUGC-CCGGCG------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 51564 0.66 0.428375
Target:  5'- cCGGGCUggugggCGCCAUGGuGUucagcuccaacuCGguGCUGCAc -3'
miRNA:   3'- -GCCCGA------GCGGUGCC-CG------------GCguCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 10428 0.66 0.428375
Target:  5'- gCGGcccGC-CGCCGCGGcGCCGgcccGCCGCu -3'
miRNA:   3'- -GCC---CGaGCGGUGCC-CGGCgu--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 6659 0.66 0.428375
Target:  5'- -cGGC-CGUCGCGGGggGCAGCCGg- -3'
miRNA:   3'- gcCCGaGCGGUGCCCggCGUCGGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.