miRNA display CGI


Results 41 - 60 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 50818 0.66 0.428375
Target:  5'- aCGGGCU--CCGCGcGGCUugGC-GCCGCGa -3'
miRNA:   3'- -GCCCGAgcGGUGC-CCGG--CGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 10428 0.66 0.428375
Target:  5'- gCGGcccGC-CGCCGCGGcGCCGgcccGCCGCu -3'
miRNA:   3'- -GCC---CGaGCGGUGCC-CGGCgu--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 51564 0.66 0.428375
Target:  5'- cCGGGCUggugggCGCCAUGGuGUucagcuccaacuCGguGCUGCAc -3'
miRNA:   3'- -GCCCGA------GCGGUGCC-CG------------GCguCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 76033 0.66 0.428375
Target:  5'- gCGGGCgccccgcgCGCCaucaGCGuGGCCGgCGGgCGCc -3'
miRNA:   3'- -GCCCGa-------GCGG----UGC-CCGGC-GUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 58635 0.66 0.428375
Target:  5'- aGGGCgcgcUCGCCGCccGCCaGCAGCaagaaGCAg -3'
miRNA:   3'- gCCCG----AGCGGUGccCGG-CGUCGg----CGU- -5'
23567 5' -66.4 NC_005261.1 + 136439 0.66 0.428375
Target:  5'- gGGGCgccgcCGCUGCGGcucuGCCGCGG-CGCc -3'
miRNA:   3'- gCCCGa----GCGGUGCC----CGGCGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 84550 0.66 0.428375
Target:  5'- gGGGCuuuuucUCGCUGuCGaGGCCGCgacccgcggccaGGCCGCc -3'
miRNA:   3'- gCCCG------AGCGGU-GC-CCGGCG------------UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 68854 0.66 0.428375
Target:  5'- gCGGGgaCGCCcucuGCCGCGGCUGUg -3'
miRNA:   3'- -GCCCgaGCGGugccCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 83002 0.66 0.428375
Target:  5'- gCGGuGCUgccgcccucgcCGCCuCGGGCCGcCGGauCCGCGc -3'
miRNA:   3'- -GCC-CGA-----------GCGGuGCCCGGC-GUC--GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 83222 0.66 0.428375
Target:  5'- aCGGGagcgUCGUugugCACGaGGCCGCcggcguGGCCGUAa -3'
miRNA:   3'- -GCCCg---AGCG----GUGC-CCGGCG------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 76911 0.66 0.427536
Target:  5'- gGGGUagGCCACcgcgcucccagguGGGCgGCAGUgGUAg -3'
miRNA:   3'- gCCCGagCGGUG-------------CCCGgCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 69238 0.66 0.427536
Target:  5'- cCGcGGCgcccgCGCgGCccgaaaaGGGCCGCGGUgGCGc -3'
miRNA:   3'- -GC-CCGa----GCGgUG-------CCCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 13460 0.66 0.427536
Target:  5'- aGGGCcccCGCUccucagccuggagGCGGccGCUGCGGCUGCGg -3'
miRNA:   3'- gCCCGa--GCGG-------------UGCC--CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 93265 0.66 0.420037
Target:  5'- cCGGGCccUCGCgCGCGucCCGCAGCagGCu -3'
miRNA:   3'- -GCCCG--AGCG-GUGCccGGCGUCGg-CGu -5'
23567 5' -66.4 NC_005261.1 + 41926 0.66 0.420037
Target:  5'- aGGGCgucaggUGCgCGCGgccgaGGCCGaAGCCGCGc -3'
miRNA:   3'- gCCCGa-----GCG-GUGC-----CCGGCgUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 34712 0.66 0.420037
Target:  5'- gCGGcGgaUGCCGCGGacGCCGCcGuCCGCGg -3'
miRNA:   3'- -GCC-CgaGCGGUGCC--CGGCGuC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 137429 0.66 0.420037
Target:  5'- gGGGCgcgCGUgGgGGGCgGCGG-CGCGg -3'
miRNA:   3'- gCCCGa--GCGgUgCCCGgCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 69058 0.66 0.420037
Target:  5'- aCGGuGCccUCGUCAaGGGgCGCGGCgGCGc -3'
miRNA:   3'- -GCC-CG--AGCGGUgCCCgGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 28868 0.66 0.420037
Target:  5'- uGGGCcgCGCUcgagcggcuggACGGcGaCGCGGCCGCc -3'
miRNA:   3'- gCCCGa-GCGG-----------UGCC-CgGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 103503 0.66 0.420037
Target:  5'- cCGcGGC-CGCCAgGGGgCGCcGaCCGCu -3'
miRNA:   3'- -GC-CCGaGCGGUgCCCgGCGuC-GGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.