miRNA display CGI


Results 61 - 80 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 88149 0.66 0.420037
Target:  5'- gCGGGggCGCCcCGGcCgCGCAGCCGg- -3'
miRNA:   3'- -GCCCgaGCGGuGCCcG-GCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 83862 0.66 0.420037
Target:  5'- uGGGCUgGgC-CGGGCCGgAcGCCGgGu -3'
miRNA:   3'- gCCCGAgCgGuGCCCGGCgU-CGGCgU- -5'
23567 5' -66.4 NC_005261.1 + 114991 0.66 0.420037
Target:  5'- gCGGGCcggcCGCCGC-GGCCcCGGCCccGCGg -3'
miRNA:   3'- -GCCCGa---GCGGUGcCCGGcGUCGG--CGU- -5'
23567 5' -66.4 NC_005261.1 + 93493 0.66 0.420037
Target:  5'- cCGcGGCgaagCGCgcgaacCGCGGcGCCGUguuGGCCGCGa -3'
miRNA:   3'- -GC-CCGa---GCG------GUGCC-CGGCG---UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 88475 0.66 0.420037
Target:  5'- gCGGGCcgUGCCGCGccGGagCGC-GCCGCGc -3'
miRNA:   3'- -GCCCGa-GCGGUGC--CCg-GCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 129713 0.66 0.420037
Target:  5'- gGaGGCagGcCCGCcGGCUGCAGCgGCAg -3'
miRNA:   3'- gC-CCGagC-GGUGcCCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 31280 0.66 0.420037
Target:  5'- gCGGaGCgCGCC-CGGGCCGaGGUgCGCGu -3'
miRNA:   3'- -GCC-CGaGCGGuGCCCGGCgUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 28868 0.66 0.420037
Target:  5'- uGGGCcgCGCUcgagcggcuggACGGcGaCGCGGCCGCc -3'
miRNA:   3'- gCCCGa-GCGG-----------UGCC-CgGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 34712 0.66 0.420037
Target:  5'- gCGGcGgaUGCCGCGGacGCCGCcGuCCGCGg -3'
miRNA:   3'- -GCC-CgaGCGGUGCC--CGGCGuC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 137429 0.66 0.420037
Target:  5'- gGGGCgcgCGUgGgGGGCgGCGG-CGCGg -3'
miRNA:   3'- gCCCGa--GCGgUgCCCGgCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 47839 0.66 0.420037
Target:  5'- aGGGCcuuccacgUCGCgGCGuGGCCGagcguagcCAGCgGCAg -3'
miRNA:   3'- gCCCG--------AGCGgUGC-CCGGC--------GUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 103503 0.66 0.420037
Target:  5'- cCGcGGC-CGCCAgGGGgCGCcGaCCGCu -3'
miRNA:   3'- -GC-CCGaGCGGUgCCCgGCGuC-GGCGu -5'
23567 5' -66.4 NC_005261.1 + 93265 0.66 0.420037
Target:  5'- cCGGGCccUCGCgCGCGucCCGCAGCagGCu -3'
miRNA:   3'- -GCCCG--AGCG-GUGCccGGCGUCGg-CGu -5'
23567 5' -66.4 NC_005261.1 + 108864 0.66 0.420037
Target:  5'- aGcGGCUCuGCagcaGCGGGUggaCGaCGGCCGCGc -3'
miRNA:   3'- gC-CCGAG-CGg---UGCCCG---GC-GUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 84224 0.66 0.420037
Target:  5'- aGcGCUCGCgGCGGcGCCuGUGcGCCGCGc -3'
miRNA:   3'- gCcCGAGCGgUGCC-CGG-CGU-CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 124890 0.66 0.420037
Target:  5'- cCGGGUUCcugGCCGCccccGCCGCcacgcgggaAGCCGCGg -3'
miRNA:   3'- -GCCCGAG---CGGUGcc--CGGCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 41926 0.66 0.420037
Target:  5'- aGGGCgucaggUGCgCGCGgccgaGGCCGaAGCCGCGc -3'
miRNA:   3'- gCCCGa-----GCG-GUGC-----CCGGCgUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 59147 0.66 0.420037
Target:  5'- -cGGCgCGCCcCGGGCgCGCGGCgccCGCc -3'
miRNA:   3'- gcCCGaGCGGuGCCCG-GCGUCG---GCGu -5'
23567 5' -66.4 NC_005261.1 + 107307 0.66 0.419208
Target:  5'- gGGGCU-GCCGCcggcggccgggagGGGCCggGCGGCCcCAg -3'
miRNA:   3'- gCCCGAgCGGUG-------------CCCGG--CGUCGGcGU- -5'
23567 5' -66.4 NC_005261.1 + 57015 0.66 0.419208
Target:  5'- uCGGGC--GCCACGGugguccggcucgcGCCcgcGCGGCCGUg -3'
miRNA:   3'- -GCCCGagCGGUGCC-------------CGG---CGUCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.