miRNA display CGI


Results 61 - 80 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 43032 0.66 0.411798
Target:  5'- gCGGGCgggCGgCGCGGGUCccagggcugggGCAcgucccccucGCCGCAc -3'
miRNA:   3'- -GCCCGa--GCgGUGCCCGG-----------CGU----------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 70891 0.66 0.409346
Target:  5'- gCGGGCccggCGCUguuccugcggcugaGCGcGGCgGCGGCCGaCGg -3'
miRNA:   3'- -GCCCGa---GCGG--------------UGC-CCGgCGUCGGC-GU- -5'
23567 5' -66.4 NC_005261.1 + 78767 0.66 0.403659
Target:  5'- cCGGcGCU-GCCcccCGacGCCGCGGCCGCGc -3'
miRNA:   3'- -GCC-CGAgCGGu--GCc-CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 69238 0.66 0.427536
Target:  5'- cCGcGGCgcccgCGCgGCccgaaaaGGGCCGCGGUgGCGc -3'
miRNA:   3'- -GC-CCGa----GCGgUG-------CCCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 134111 0.66 0.436809
Target:  5'- aGGGCU-GCCG-GGGCCaCAGCuCGUu -3'
miRNA:   3'- gCCCGAgCGGUgCCCGGcGUCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 40458 0.66 0.436809
Target:  5'- gGGGCUCGggagucgaUGCcGGCCGC-GCCGCc -3'
miRNA:   3'- gCCCGAGCg-------GUGcCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 69058 0.66 0.420037
Target:  5'- aCGGuGCccUCGUCAaGGGgCGCGGCgGCGc -3'
miRNA:   3'- -GCC-CG--AGCGGUgCCCgGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 84224 0.66 0.420037
Target:  5'- aGcGCUCGCgGCGGcGCCuGUGcGCCGCGc -3'
miRNA:   3'- gCcCGAGCGgUGCC-CGG-CGU-CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 89409 0.66 0.428375
Target:  5'- gGGGC-CGaCgACGGcGUCGCGgacGCCGCGc -3'
miRNA:   3'- gCCCGaGC-GgUGCC-CGGCGU---CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 117900 0.66 0.417555
Target:  5'- gCGGGCgUCGCUcgugcGCGGcucggggcccagucGCCGUuuuucuGCCGCAa -3'
miRNA:   3'- -GCCCG-AGCGG-----UGCC--------------CGGCGu-----CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 106037 0.66 0.43258
Target:  5'- uCGGGCgccagcuccagcgcgCGCCGCccGcaggccagguacaccGGCCGCAGCgGCGc -3'
miRNA:   3'- -GCCCGa--------------GCGGUG--C---------------CCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 6659 0.66 0.428375
Target:  5'- -cGGC-CGUCGCGGGggGCAGCCGg- -3'
miRNA:   3'- gcCCGaGCGGUGCCCggCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 61795 0.66 0.403659
Target:  5'- uCGGGCgcgucCGCCAUGGcGCCgGCGcucuGCaCGCGc -3'
miRNA:   3'- -GCCCGa----GCGGUGCC-CGG-CGU----CG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 75928 0.66 0.436809
Target:  5'- gGGGC-CGCCGCGcGcCCGC-GCgGCGc -3'
miRNA:   3'- gCCCGaGCGGUGCcC-GGCGuCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 2891 0.66 0.436809
Target:  5'- gGGGCgaacCGCUcCGGGCCaaaguccaGCAcgGCCGCc -3'
miRNA:   3'- gCCCGa---GCGGuGCCCGG--------CGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 85489 0.66 0.415081
Target:  5'- gCGGGCcacuuccccgaucgCGCCGCGGcGCCGCAuCuCGUc -3'
miRNA:   3'- -GCCCGa-------------GCGGUGCC-CGGCGUcG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 134839 0.66 0.436809
Target:  5'- -cGGCggaagUGCCgGCGcGGCUgGCGGCCGCGc -3'
miRNA:   3'- gcCCGa----GCGG-UGC-CCGG-CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 91970 0.66 0.403659
Target:  5'- cCGGGgaCacgGUCGC-GGCCGCcGCCGCGg -3'
miRNA:   3'- -GCCCgaG---CGGUGcCCGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 136439 0.66 0.428375
Target:  5'- gGGGCgccgcCGCUGCGGcucuGCCGCGG-CGCc -3'
miRNA:   3'- gCCCGa----GCGGUGCC----CGGCGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 93265 0.66 0.420037
Target:  5'- cCGGGCccUCGCgCGCGucCCGCAGCagGCu -3'
miRNA:   3'- -GCCCG--AGCG-GUGCccGGCGUCGg-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.