miRNA display CGI


Results 41 - 60 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 83222 0.66 0.428375
Target:  5'- aCGGGagcgUCGUugugCACGaGGCCGCcggcguGGCCGUAa -3'
miRNA:   3'- -GCCCg---AGCG----GUGC-CCGGCG------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 134111 0.66 0.436809
Target:  5'- aGGGCU-GCCG-GGGCCaCAGCuCGUu -3'
miRNA:   3'- gCCCGAgCGGUgCCCGGcGUCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 117900 0.66 0.417555
Target:  5'- gCGGGCgUCGCUcgugcGCGGcucggggcccagucGCCGUuuuucuGCCGCAa -3'
miRNA:   3'- -GCCCG-AGCGG-----UGCC--------------CGGCGu-----CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 78767 0.66 0.403659
Target:  5'- cCGGcGCU-GCCcccCGacGCCGCGGCCGCGc -3'
miRNA:   3'- -GCC-CGAgCGGu--GCc-CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 84550 0.66 0.428375
Target:  5'- gGGGCuuuuucUCGCUGuCGaGGCCGCgacccgcggccaGGCCGCc -3'
miRNA:   3'- gCCCG------AGCGGU-GC-CCGGCG------------UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 87098 0.66 0.411798
Target:  5'- gGGGCUuucgCGCCGaaugaucacaGcGGCCGCgacgucaaaGGCCGCGa -3'
miRNA:   3'- gCCCGA----GCGGUg---------C-CCGGCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 57015 0.66 0.419208
Target:  5'- uCGGGC--GCCACGGugguccggcucgcGCCcgcGCGGCCGUg -3'
miRNA:   3'- -GCCCGagCGGUGCC-------------CGG---CGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 136439 0.66 0.428375
Target:  5'- gGGGCgccgcCGCUGCGGcucuGCCGCGG-CGCc -3'
miRNA:   3'- gCCCGa----GCGGUGCC----CGGCGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 76911 0.66 0.427536
Target:  5'- gGGGUagGCCACcgcgcucccagguGGGCgGCAGUgGUAg -3'
miRNA:   3'- gCCCGagCGGUG-------------CCCGgCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 34276 0.66 0.395624
Target:  5'- gGcGGC-CGCCGC-GGUCGC-GCCGCu -3'
miRNA:   3'- gC-CCGaGCGGUGcCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 31280 0.66 0.420037
Target:  5'- gCGGaGCgCGCC-CGGGCCGaGGUgCGCGu -3'
miRNA:   3'- -GCC-CGaGCGGuGCCCGGCgUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 118262 0.66 0.436809
Target:  5'- aGGGCg-GUCGCu-GCCGCAGCCGa- -3'
miRNA:   3'- gCCCGagCGGUGccCGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 43032 0.66 0.411798
Target:  5'- gCGGGCgggCGgCGCGGGUCccagggcugggGCAcgucccccucGCCGCAc -3'
miRNA:   3'- -GCCCGa--GCgGUGCCCGG-----------CGU----------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 4351 0.66 0.403659
Target:  5'- gCGGGCUUGCgCAgaccacagguaGGcGCgGCAGUCGCGc -3'
miRNA:   3'- -GCCCGAGCG-GUg----------CC-CGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 108060 0.66 0.411798
Target:  5'- uCGGcGCgcagCGCgGCGGG-CGCGgcGCCGCu -3'
miRNA:   3'- -GCC-CGa---GCGgUGCCCgGCGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 73723 0.66 0.403659
Target:  5'- aGGaGC-CGcCCGCGGGCCccgaGCAcCCGCGc -3'
miRNA:   3'- gCC-CGaGC-GGUGCCCGG----CGUcGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 84224 0.66 0.420037
Target:  5'- aGcGCUCGCgGCGGcGCCuGUGcGCCGCGc -3'
miRNA:   3'- gCcCGAGCGgUGCC-CGG-CGU-CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 78845 0.66 0.411798
Target:  5'- cCGGGCUCGgCGcCGuGG-CGCGGgCGCu -3'
miRNA:   3'- -GCCCGAGCgGU-GC-CCgGCGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 108338 0.66 0.428375
Target:  5'- gCGcGCU-GCCGCGGGCC-CGGgCGCu -3'
miRNA:   3'- -GCcCGAgCGGUGCCCGGcGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 70891 0.66 0.409346
Target:  5'- gCGGGCccggCGCUguuccugcggcugaGCGcGGCgGCGGCCGaCGg -3'
miRNA:   3'- -GCCCGa---GCGG--------------UGC-CCGgCGUCGGC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.