Results 41 - 60 of 919 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 75211 | 0.77 | 0.08111 |
Target: 5'- gCGGGCgccggCGCCcgcGCGGG-CGCGGCCGCc -3' miRNA: 3'- -GCCCGa----GCGG---UGCCCgGCGUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 97175 | 0.76 | 0.083174 |
Target: 5'- uGGGUcgcgggCGCCGgcCGGGCCGCGGCCGgAa -3' miRNA: 3'- gCCCGa-----GCGGU--GCCCGGCGUCGGCgU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 26605 | 0.76 | 0.085288 |
Target: 5'- gCGGGCggcggCGgCACGGcGCCGCAGCC-CAg -3' miRNA: 3'- -GCCCGa----GCgGUGCC-CGGCGUCGGcGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 121199 | 0.76 | 0.08967 |
Target: 5'- cCGGGCccgggGCCGCGGGCCGgAGaCUGCAg -3' miRNA: 3'- -GCCCGag---CGGUGCCCGGCgUC-GGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 118929 | 0.76 | 0.08967 |
Target: 5'- gCGGGCgcggCGCCGCGcggcuGGCCGCGG-CGCAc -3' miRNA: 3'- -GCCCGa---GCGGUGC-----CCGGCGUCgGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 43345 | 0.76 | 0.08967 |
Target: 5'- -uGGCUCguguGCCugGGGCUGguGCCGCu -3' miRNA: 3'- gcCCGAG----CGGugCCCGGCguCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 103593 | 0.76 | 0.08967 |
Target: 5'- --cGCUCGCCGcCGuGGCCGCGGCgGCAg -3' miRNA: 3'- gccCGAGCGGU-GC-CCGGCGUCGgCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 102312 | 0.76 | 0.09194 |
Target: 5'- uGGGCUgCgGCgCugGGGCCGCGcuGCCGCGg -3' miRNA: 3'- gCCCGA-G-CG-GugCCCGGCGU--CGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 5642 | 0.76 | 0.09403 |
Target: 5'- cCGGGCcgggCGuCCGCGGGCgcgccgacgucuuCGCAGCCGUAc -3' miRNA: 3'- -GCCCGa---GC-GGUGCCCG-------------GCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 3937 | 0.76 | 0.094265 |
Target: 5'- cCGGGUagGCCAUGGGCgcguaCGCGcGCCGCAg -3' miRNA: 3'- -GCCCGagCGGUGCCCG-----GCGU-CGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 3372 | 0.76 | 0.094265 |
Target: 5'- aGGGC-CGCgaGCGcGGCCGcCAGCCGCGc -3' miRNA: 3'- gCCCGaGCGg-UGC-CCGGC-GUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 53188 | 0.76 | 0.094265 |
Target: 5'- aCGGGCUCacggcgaucgugGCCGgGGcGCgGCGGCCGCGc -3' miRNA: 3'- -GCCCGAG------------CGGUgCC-CGgCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 98677 | 0.76 | 0.094265 |
Target: 5'- gCGGGCUcCGCCG-GGGCCGgAGgCGCGg -3' miRNA: 3'- -GCCCGA-GCGGUgCCCGGCgUCgGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 107889 | 0.76 | 0.094265 |
Target: 5'- aGGGC-CGCgaGCGcGGCCGcCAGCCGCGc -3' miRNA: 3'- gCCCGaGCGg-UGC-CCGGC-GUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 108454 | 0.76 | 0.094265 |
Target: 5'- cCGGGUagGCCAUGGGCgcguaCGCGcGCCGCAg -3' miRNA: 3'- -GCCCGagCGGUGCCCG-----GCGU-CGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 68113 | 0.76 | 0.096646 |
Target: 5'- uCGGGCUggaGCUgcGCGGGCCGCGG-CGCGg -3' miRNA: 3'- -GCCCGAg--CGG--UGCCCGGCGUCgGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 118227 | 0.75 | 0.099083 |
Target: 5'- aCGGGUgcggGUCAgGGGCCGCGGCCGgGg -3' miRNA: 3'- -GCCCGag--CGGUgCCCGGCGUCGGCgU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 136816 | 0.75 | 0.099083 |
Target: 5'- gCGGGCgccgccccCGCCGCc-GCCGCGGCCGCGg -3' miRNA: 3'- -GCCCGa-------GCGGUGccCGGCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 32635 | 0.75 | 0.099083 |
Target: 5'- cCGGGCUCGCCcuggaGCGGGgccagccccCCGC-GCCGCu -3' miRNA: 3'- -GCCCGAGCGG-----UGCCC---------GGCGuCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 109382 | 0.75 | 0.099083 |
Target: 5'- aGGGCggcgGCCACGacGGCCGCcucAGCCGCGg -3' miRNA: 3'- gCCCGag--CGGUGC--CCGGCG---UCGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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