miRNA display CGI


Results 41 - 60 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 133760 0.78 0.064618
Target:  5'- cCGcGGCgccgCGCgACGGGCCGCcGCCGCu -3'
miRNA:   3'- -GC-CCGa---GCGgUGCCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 123862 0.78 0.066277
Target:  5'- gCGGGCcaccgCGCCGCcccGGCCGCGGCUGCu -3'
miRNA:   3'- -GCCCGa----GCGGUGc--CCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 20145 0.77 0.073335
Target:  5'- gCGGGC-CGCCagcagacgaGCGcGGCUGCGGCCGCu -3'
miRNA:   3'- -GCCCGaGCGG---------UGC-CCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 102551 0.77 0.075209
Target:  5'- gGGGCUCGCCgGCgGGGgUGCGGCCgGCAg -3'
miRNA:   3'- gCCCGAGCGG-UG-CCCgGCGUCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 96608 0.77 0.075209
Target:  5'- -aGG-UCGCCGaGGGCCGCAGCCGCu -3'
miRNA:   3'- gcCCgAGCGGUgCCCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 127702 0.77 0.077129
Target:  5'- gGGGCgacagcgagcgCGCCGCGGGgcCCGCAGCgGCGg -3'
miRNA:   3'- gCCCGa----------GCGGUGCCC--GGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 75211 0.77 0.08111
Target:  5'- gCGGGCgccggCGCCcgcGCGGG-CGCGGCCGCc -3'
miRNA:   3'- -GCCCGa----GCGG---UGCCCgGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 26605 0.76 0.085288
Target:  5'- gCGGGCggcggCGgCACGGcGCCGCAGCC-CAg -3'
miRNA:   3'- -GCCCGa----GCgGUGCC-CGGCGUCGGcGU- -5'
23567 5' -66.4 NC_005261.1 + 102312 0.76 0.09194
Target:  5'- uGGGCUgCgGCgCugGGGCCGCGcuGCCGCGg -3'
miRNA:   3'- gCCCGA-G-CG-GugCCCGGCGU--CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 5642 0.76 0.09403
Target:  5'- cCGGGCcgggCGuCCGCGGGCgcgccgacgucuuCGCAGCCGUAc -3'
miRNA:   3'- -GCCCGa---GC-GGUGCCCG-------------GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 107889 0.76 0.094265
Target:  5'- aGGGC-CGCgaGCGcGGCCGcCAGCCGCGc -3'
miRNA:   3'- gCCCGaGCGg-UGC-CCGGC-GUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 53188 0.76 0.094265
Target:  5'- aCGGGCUCacggcgaucgugGCCGgGGcGCgGCGGCCGCGc -3'
miRNA:   3'- -GCCCGAG------------CGGUgCC-CGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 108454 0.76 0.094265
Target:  5'- cCGGGUagGCCAUGGGCgcguaCGCGcGCCGCAg -3'
miRNA:   3'- -GCCCGagCGGUGCCCG-----GCGU-CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 109382 0.75 0.099083
Target:  5'- aGGGCggcgGCCACGacGGCCGCcucAGCCGCGg -3'
miRNA:   3'- gCCCGag--CGGUGC--CCGGCG---UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 118227 0.75 0.099083
Target:  5'- aCGGGUgcggGUCAgGGGCCGCGGCCGgGg -3'
miRNA:   3'- -GCCCGag--CGGUgCCCGGCGUCGGCgU- -5'
23567 5' -66.4 NC_005261.1 + 137152 0.75 0.099083
Target:  5'- cCGGGCUCGCCcuggaGCGGGgccagccccCCGC-GCCGCu -3'
miRNA:   3'- -GCCCGAGCGG-----UGCCC---------GGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 136816 0.75 0.099083
Target:  5'- gCGGGCgccgccccCGCCGCc-GCCGCGGCCGCGg -3'
miRNA:   3'- -GCCCGa-------GCGGUGccCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 35573 0.75 0.100573
Target:  5'- uGGGCgccgcggaggaggUGCUGCGGGCCGCggacgaAGCCGCGg -3'
miRNA:   3'- gCCCGa------------GCGGUGCCCGGCG------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 35690 0.75 0.101578
Target:  5'- cCGGGC--GCCugGGGCCGCAggcggccaaGCUGCAc -3'
miRNA:   3'- -GCCCGagCGGugCCCGGCGU---------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 20294 0.75 0.104133
Target:  5'- --aGCgagCGCgCACGGGCCGCAGCCGg- -3'
miRNA:   3'- gccCGa--GCG-GUGCCCGGCGUCGGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.