miRNA display CGI


Results 41 - 60 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 106223 0.66 0.436809
Target:  5'- cCGcGGC-CGCCugGcGCgGCcGCCGCGc -3'
miRNA:   3'- -GC-CCGaGCGGugCcCGgCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 123197 0.66 0.419208
Target:  5'- uGGGCggacccagcCGCCGCGuaagcgcGGCCugccgccuaGCGGCCGCc -3'
miRNA:   3'- gCCCGa--------GCGGUGC-------CCGG---------CGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 47923 0.66 0.403659
Target:  5'- gCGcGGC-CGUCACGucCCGCGcGCCGCGc -3'
miRNA:   3'- -GC-CCGaGCGGUGCccGGCGU-CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 133617 0.66 0.411798
Target:  5'- uCGcGCUggCGCUGUGGGCCGCGcucGCCGCGc -3'
miRNA:   3'- -GCcCGA--GCGGUGCCCGGCGU---CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 129713 0.66 0.420037
Target:  5'- gGaGGCagGcCCGCcGGCUGCAGCgGCAg -3'
miRNA:   3'- gC-CCGagC-GGUGcCCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 29594 0.66 0.436809
Target:  5'- aGGGCU-GCCG-GGGCCaCAGCuCGUu -3'
miRNA:   3'- gCCCGAgCGGUgCCCGGcGUCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 109613 0.66 0.436809
Target:  5'- cCGcGCUCGCCAgCGcuauaaaggcGGCuUGCGGCCGCc -3'
miRNA:   3'- -GCcCGAGCGGU-GC----------CCG-GCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 132690 0.66 0.436809
Target:  5'- uGGGCUU-CCGCGuGGCCGUGcCCGUc -3'
miRNA:   3'- gCCCGAGcGGUGC-CCGGCGUcGGCGu -5'
23567 5' -66.4 NC_005261.1 + 58635 0.66 0.428375
Target:  5'- aGGGCgcgcUCGCCGCccGCCaGCAGCaagaaGCAg -3'
miRNA:   3'- gCCCG----AGCGGUGccCGG-CGUCGg----CGU- -5'
23567 5' -66.4 NC_005261.1 + 119033 0.66 0.420037
Target:  5'- gCGGaCgUCGCCgACGGuaacgcgcCCGCGGCCGCGc -3'
miRNA:   3'- -GCCcG-AGCGG-UGCCc-------GGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 55965 0.66 0.420037
Target:  5'- cCGGGuCUC-CCGCGaGcGCCGCcGUCGCc -3'
miRNA:   3'- -GCCC-GAGcGGUGC-C-CGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 76033 0.66 0.428375
Target:  5'- gCGGGCgccccgcgCGCCaucaGCGuGGCCGgCGGgCGCc -3'
miRNA:   3'- -GCCCGa-------GCGG----UGC-CCGGC-GUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 78215 0.66 0.436809
Target:  5'- cCGuGGCUggccUGCCGCucGCUcaGCAGCCGCAg -3'
miRNA:   3'- -GC-CCGA----GCGGUGccCGG--CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 86856 0.66 0.411798
Target:  5'- cCGGcGCUCaacGCCGcCGGG-CGCGGCgGCc -3'
miRNA:   3'- -GCC-CGAG---CGGU-GCCCgGCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 106916 0.66 0.411798
Target:  5'- cCGcGGCgCGCUGCaGGGCCGcCAGCgacaCGCGc -3'
miRNA:   3'- -GC-CCGaGCGGUG-CCCGGC-GUCG----GCGU- -5'
23567 5' -66.4 NC_005261.1 + 44222 0.66 0.420037
Target:  5'- cCGGGagcgcgCGCUGCuGGCCGCccAGCgCGCGg -3'
miRNA:   3'- -GCCCga----GCGGUGcCCGGCG--UCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 12511 0.66 0.411798
Target:  5'- cCGGGCgacCG-CGCGGGgccCCGCGccGCCGCc -3'
miRNA:   3'- -GCCCGa--GCgGUGCCC---GGCGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 123423 1.07 0.000401
Target:  5'- gCGGGCUCGCCACGGGCCGCAGCCGCAg -3'
miRNA:   3'- -GCCCGAGCGGUGCCCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 134144 0.66 0.403659
Target:  5'- uGGGCUgcgccuggCGCCACccgGGGCUGCugcucccGCUGCu -3'
miRNA:   3'- gCCCGA--------GCGGUG---CCCGGCGu------CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 17134 0.66 0.411798
Target:  5'- gCGGGUaCGCCgGCGGGUcgaCGUAGaCCGUc -3'
miRNA:   3'- -GCCCGaGCGG-UGCCCG---GCGUC-GGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.