miRNA display CGI


Results 21 - 40 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 50818 0.66 0.428375
Target:  5'- aCGGGCU--CCGCGcGGCUugGC-GCCGCGa -3'
miRNA:   3'- -GCCCGAgcGGUGC-CCGG--CGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 76033 0.66 0.428375
Target:  5'- gCGGGCgccccgcgCGCCaucaGCGuGGCCGgCGGgCGCc -3'
miRNA:   3'- -GCCCGa-------GCGG----UGC-CCGGC-GUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 5195 0.66 0.436809
Target:  5'- cCGGGCcCcCCucCGGGCCGaGGuCCGCGg -3'
miRNA:   3'- -GCCCGaGcGGu-GCCCGGCgUC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 118426 0.66 0.436809
Target:  5'- -uGGCUgucgcCGCCGCGGacGCCGCcGCgGCGc -3'
miRNA:   3'- gcCCGA-----GCGGUGCC--CGGCGuCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 78852 0.66 0.420037
Target:  5'- gCGGcGCcCGCCGCcGGagCGCgAGCCGCGu -3'
miRNA:   3'- -GCC-CGaGCGGUGcCCg-GCG-UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 59147 0.66 0.420037
Target:  5'- -cGGCgCGCCcCGGGCgCGCGGCgccCGCc -3'
miRNA:   3'- gcCCGaGCGGuGCCCG-GCGUCG---GCGu -5'
23567 5' -66.4 NC_005261.1 + 77543 0.66 0.433424
Target:  5'- cCGGGCUgG-UACGGcGCCGCcgccaguggcgccGCCGCGc -3'
miRNA:   3'- -GCCCGAgCgGUGCC-CGGCGu------------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 30322 0.66 0.436809
Target:  5'- -cGGCggaagUGCCgGCGcGGCUgGCGGCCGCGc -3'
miRNA:   3'- gcCCGa----GCGG-UGC-CCGG-CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 88475 0.66 0.420037
Target:  5'- gCGGGCcgUGCCGCGccGGagCGC-GCCGCGc -3'
miRNA:   3'- -GCCCGa-GCGGUGC--CCg-GCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 109885 0.66 0.44021
Target:  5'- gCGGGCgggCGCCcCGGGgcuacagccccuggaCCGCcgggauGCUGCAc -3'
miRNA:   3'- -GCCCGa--GCGGuGCCC---------------GGCGu-----CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 1520 0.66 0.43258
Target:  5'- uCGGGCgccagcuccagcgcgCGCCGCccGcaggccagguacaccGGCCGCAGCgGCGc -3'
miRNA:   3'- -GCCCGa--------------GCGGUG--C---------------CCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 3821 0.66 0.428375
Target:  5'- gCGcGCU-GCCGCGGGCC-CGGgCGCu -3'
miRNA:   3'- -GCcCGAgCGGUGCCCGGcGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 30960 0.66 0.436809
Target:  5'- uCGaGGCcCGCCGCGacggcccGCCGCGG-CGCAa -3'
miRNA:   3'- -GC-CCGaGCGGUGCc------CGGCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 3492 0.66 0.436809
Target:  5'- gGGGCcacgguucgCGCCgccaGCGcGGCCGCcuccagcgcggcGGCCGCc -3'
miRNA:   3'- gCCCGa--------GCGG----UGC-CCGGCG------------UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 100979 0.66 0.436809
Target:  5'- aGGcGCccagcgcgUCGCCGCGcuCCGcCAGCCGCGc -3'
miRNA:   3'- gCC-CG--------AGCGGUGCccGGC-GUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 132690 0.66 0.436809
Target:  5'- uGGGCUU-CCGCGuGGCCGUGcCCGUc -3'
miRNA:   3'- gCCCGAGcGGUGC-CCGGCGUcGGCGu -5'
23567 5' -66.4 NC_005261.1 + 108864 0.66 0.420037
Target:  5'- aGcGGCUCuGCagcaGCGGGUggaCGaCGGCCGCGc -3'
miRNA:   3'- gC-CCGAG-CGg---UGCCCG---GC-GUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 44222 0.66 0.420037
Target:  5'- cCGGGagcgcgCGCUGCuGGCCGCccAGCgCGCGg -3'
miRNA:   3'- -GCCCga----GCGGUGcCCGGCG--UCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 114991 0.66 0.420037
Target:  5'- gCGGGCcggcCGCCGC-GGCCcCGGCCccGCGg -3'
miRNA:   3'- -GCCCGa---GCGGUGcCCGGcGUCGG--CGU- -5'
23567 5' -66.4 NC_005261.1 + 55965 0.66 0.420037
Target:  5'- cCGGGuCUC-CCGCGaGcGCCGCcGUCGCc -3'
miRNA:   3'- -GCCC-GAGcGGUGC-C-CGGCGuCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.