miRNA display CGI


Results 21 - 40 of 919 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 120253 0.65 0.44277
Target:  5'- cCGcGGCU-GCCACGccGGCCGUcuaccgcccgcccgAGCUGCGc -3'
miRNA:   3'- -GC-CCGAgCGGUGC--CCGGCG--------------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 119033 0.66 0.420037
Target:  5'- gCGGaCgUCGCCgACGGuaacgcgcCCGCGGCCGCGc -3'
miRNA:   3'- -GCCcG-AGCGG-UGCCc-------GGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 47839 0.66 0.420037
Target:  5'- aGGGCcuuccacgUCGCgGCGuGGCCGagcguagcCAGCgGCAg -3'
miRNA:   3'- gCCCG--------AGCGgUGC-CCGGC--------GUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 68854 0.66 0.428375
Target:  5'- gCGGGgaCGCCcucuGCCGCGGCUGUg -3'
miRNA:   3'- -GCCCgaGCGGugccCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 126467 0.66 0.436809
Target:  5'- gCGcGCUCGCCucGCGGuaguaccgcGCCGCcaccagcuGCCGCAg -3'
miRNA:   3'- -GCcCGAGCGG--UGCC---------CGGCGu-------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 41778 0.66 0.420037
Target:  5'- aGGuGCUcuucCGUCACGGGCa--GGCCGUAc -3'
miRNA:   3'- gCC-CGA----GCGGUGCCCGgcgUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 88149 0.66 0.420037
Target:  5'- gCGGGggCGCCcCGGcCgCGCAGCCGg- -3'
miRNA:   3'- -GCCCgaGCGGuGCCcG-GCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 81194 0.66 0.436809
Target:  5'- gGGGCacgGCCGCGcGGgCGCgAGCCGg- -3'
miRNA:   3'- gCCCGag-CGGUGC-CCgGCG-UCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 124890 0.66 0.420037
Target:  5'- cCGGGUUCcugGCCGCccccGCCGCcacgcgggaAGCCGCGg -3'
miRNA:   3'- -GCCCGAG---CGGUGcc--CGGCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 50818 0.66 0.428375
Target:  5'- aCGGGCU--CCGCGcGGCUugGC-GCCGCGa -3'
miRNA:   3'- -GCCCGAgcGGUGC-CCGG--CGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 106223 0.66 0.436809
Target:  5'- cCGcGGC-CGCCugGcGCgGCcGCCGCGc -3'
miRNA:   3'- -GC-CCGaGCGGugCcCGgCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 109613 0.66 0.436809
Target:  5'- cCGcGCUCGCCAgCGcuauaaaggcGGCuUGCGGCCGCc -3'
miRNA:   3'- -GCcCGAGCGGU-GC----------CCG-GCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 123197 0.66 0.419208
Target:  5'- uGGGCggacccagcCGCCGCGuaagcgcGGCCugccgccuaGCGGCCGCc -3'
miRNA:   3'- gCCCGa--------GCGGUGC-------CCGG---------CGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 129713 0.66 0.420037
Target:  5'- gGaGGCagGcCCGCcGGCUGCAGCgGCAg -3'
miRNA:   3'- gC-CCGagC-GGUGcCCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 55965 0.66 0.420037
Target:  5'- cCGGGuCUC-CCGCGaGcGCCGCcGUCGCc -3'
miRNA:   3'- -GCCC-GAGcGGUGC-C-CGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 29594 0.66 0.436809
Target:  5'- aGGGCU-GCCG-GGGCCaCAGCuCGUu -3'
miRNA:   3'- gCCCGAgCGGUgCCCGGcGUCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 83039 0.66 0.436809
Target:  5'- aGGGCcgcUCGCCGCGGGagggggcuccCUGCGcgcccCCGCGg -3'
miRNA:   3'- gCCCG---AGCGGUGCCC----------GGCGUc----GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 132690 0.66 0.436809
Target:  5'- uGGGCUU-CCGCGuGGCCGUGcCCGUc -3'
miRNA:   3'- gCCCGAGcGGUGC-CCGGCGUcGGCGu -5'
23567 5' -66.4 NC_005261.1 + 58635 0.66 0.428375
Target:  5'- aGGGCgcgcUCGCCGCccGCCaGCAGCaagaaGCAg -3'
miRNA:   3'- gCCCG----AGCGGUGccCGG-CGUCGg----CGU- -5'
23567 5' -66.4 NC_005261.1 + 93493 0.66 0.420037
Target:  5'- cCGcGGCgaagCGCgcgaacCGCGGcGCCGUguuGGCCGCGa -3'
miRNA:   3'- -GC-CCGa---GCG------GUGCC-CGGCG---UCGGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.