miRNA display CGI


Results 1 - 20 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 120253 0.65 0.44277
Target:  5'- cCGcGGCU-GCCACGccGGCCGUcuaccgcccgcccgAGCUGCGc -3'
miRNA:   3'- -GC-CCGAgCGGUGC--CCGGCG--------------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 77543 0.66 0.433424
Target:  5'- cCGGGCUgG-UACGGcGCCGCcgccaguggcgccGCCGCGc -3'
miRNA:   3'- -GCCCGAgCgGUGCC-CGGCGu------------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 76033 0.66 0.428375
Target:  5'- gCGGGCgccccgcgCGCCaucaGCGuGGCCGgCGGgCGCc -3'
miRNA:   3'- -GCCCGa-------GCGG----UGC-CCGGC-GUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 123423 1.07 0.000401
Target:  5'- gCGGGCUCGCCACGGGCCGCAGCCGCAg -3'
miRNA:   3'- -GCCCGAGCGGUGCCCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 132690 0.66 0.436809
Target:  5'- uGGGCUU-CCGCGuGGCCGUGcCCGUc -3'
miRNA:   3'- gCCCGAGcGGUGC-CCGGCGUcGGCGu -5'
23567 5' -66.4 NC_005261.1 + 109613 0.66 0.436809
Target:  5'- cCGcGCUCGCCAgCGcuauaaaggcGGCuUGCGGCCGCc -3'
miRNA:   3'- -GCcCGAGCGGU-GC----------CCG-GCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 100979 0.66 0.436809
Target:  5'- aGGcGCccagcgcgUCGCCGCGcuCCGcCAGCCGCGc -3'
miRNA:   3'- gCC-CG--------AGCGGUGCccGGC-GUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 81194 0.66 0.436809
Target:  5'- gGGGCacgGCCGCGcGGgCGCgAGCCGg- -3'
miRNA:   3'- gCCCGag-CGGUGC-CCgGCG-UCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 3492 0.66 0.436809
Target:  5'- gGGGCcacgguucgCGCCgccaGCGcGGCCGCcuccagcgcggcGGCCGCc -3'
miRNA:   3'- gCCCGa--------GCGG----UGC-CCGGCG------------UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 135366 0.66 0.435962
Target:  5'- aGGGC-CGCCGCgucaccuGGGagaCGCucaugguccacGGCCGCGa -3'
miRNA:   3'- gCCCGaGCGGUG-------CCCg--GCG-----------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 83039 0.66 0.436809
Target:  5'- aGGGCcgcUCGCCGCGGGagggggcuccCUGCGcgcccCCGCGg -3'
miRNA:   3'- gCCCG---AGCGGUGCCC----------GGCGUc----GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 5195 0.66 0.436809
Target:  5'- cCGGGCcCcCCucCGGGCCGaGGuCCGCGg -3'
miRNA:   3'- -GCCCGaGcGGu-GCCCGGCgUC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 109885 0.66 0.44021
Target:  5'- gCGGGCgggCGCCcCGGGgcuacagccccuggaCCGCcgggauGCUGCAc -3'
miRNA:   3'- -GCCCGa--GCGGuGCCC---------------GGCGu-----CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 30960 0.66 0.436809
Target:  5'- uCGaGGCcCGCCGCGacggcccGCCGCGG-CGCAa -3'
miRNA:   3'- -GC-CCGaGCGGUGCc------CGGCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 30322 0.66 0.436809
Target:  5'- -cGGCggaagUGCCgGCGcGGCUgGCGGCCGCGc -3'
miRNA:   3'- gcCCGa----GCGG-UGC-CCGG-CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 78215 0.66 0.436809
Target:  5'- cCGuGGCUggccUGCCGCucGCUcaGCAGCCGCAg -3'
miRNA:   3'- -GC-CCGA----GCGGUGccCGG--CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 29594 0.66 0.436809
Target:  5'- aGGGCU-GCCG-GGGCCaCAGCuCGUu -3'
miRNA:   3'- gCCCGAgCGGUgCCCGGcGUCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 1520 0.66 0.43258
Target:  5'- uCGGGCgccagcuccagcgcgCGCCGCccGcaggccagguacaccGGCCGCAGCgGCGc -3'
miRNA:   3'- -GCCCGa--------------GCGGUG--C---------------CCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 118426 0.66 0.436809
Target:  5'- -uGGCUgucgcCGCCGCGGacGCCGCcGCgGCGc -3'
miRNA:   3'- gcCCGA-----GCGGUGCC--CGGCGuCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 106223 0.66 0.436809
Target:  5'- cCGcGGC-CGCCugGcGCgGCcGCCGCGc -3'
miRNA:   3'- -GC-CCGaGCGGugCcCGgCGuCGGCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.