Results 1 - 20 of 919 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 120253 | 0.65 | 0.44277 |
Target: 5'- cCGcGGCU-GCCACGccGGCCGUcuaccgcccgcccgAGCUGCGc -3' miRNA: 3'- -GC-CCGAgCGGUGC--CCGGCG--------------UCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 77543 | 0.66 | 0.433424 |
Target: 5'- cCGGGCUgG-UACGGcGCCGCcgccaguggcgccGCCGCGc -3' miRNA: 3'- -GCCCGAgCgGUGCC-CGGCGu------------CGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 76033 | 0.66 | 0.428375 |
Target: 5'- gCGGGCgccccgcgCGCCaucaGCGuGGCCGgCGGgCGCc -3' miRNA: 3'- -GCCCGa-------GCGG----UGC-CCGGC-GUCgGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 123423 | 1.07 | 0.000401 |
Target: 5'- gCGGGCUCGCCACGGGCCGCAGCCGCAg -3' miRNA: 3'- -GCCCGAGCGGUGCCCGGCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 132690 | 0.66 | 0.436809 |
Target: 5'- uGGGCUU-CCGCGuGGCCGUGcCCGUc -3' miRNA: 3'- gCCCGAGcGGUGC-CCGGCGUcGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 109613 | 0.66 | 0.436809 |
Target: 5'- cCGcGCUCGCCAgCGcuauaaaggcGGCuUGCGGCCGCc -3' miRNA: 3'- -GCcCGAGCGGU-GC----------CCG-GCGUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 100979 | 0.66 | 0.436809 |
Target: 5'- aGGcGCccagcgcgUCGCCGCGcuCCGcCAGCCGCGc -3' miRNA: 3'- gCC-CG--------AGCGGUGCccGGC-GUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 81194 | 0.66 | 0.436809 |
Target: 5'- gGGGCacgGCCGCGcGGgCGCgAGCCGg- -3' miRNA: 3'- gCCCGag-CGGUGC-CCgGCG-UCGGCgu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 3492 | 0.66 | 0.436809 |
Target: 5'- gGGGCcacgguucgCGCCgccaGCGcGGCCGCcuccagcgcggcGGCCGCc -3' miRNA: 3'- gCCCGa--------GCGG----UGC-CCGGCG------------UCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 135366 | 0.66 | 0.435962 |
Target: 5'- aGGGC-CGCCGCgucaccuGGGagaCGCucaugguccacGGCCGCGa -3' miRNA: 3'- gCCCGaGCGGUG-------CCCg--GCG-----------UCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 83039 | 0.66 | 0.436809 |
Target: 5'- aGGGCcgcUCGCCGCGGGagggggcuccCUGCGcgcccCCGCGg -3' miRNA: 3'- gCCCG---AGCGGUGCCC----------GGCGUc----GGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 5195 | 0.66 | 0.436809 |
Target: 5'- cCGGGCcCcCCucCGGGCCGaGGuCCGCGg -3' miRNA: 3'- -GCCCGaGcGGu-GCCCGGCgUC-GGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 109885 | 0.66 | 0.44021 |
Target: 5'- gCGGGCgggCGCCcCGGGgcuacagccccuggaCCGCcgggauGCUGCAc -3' miRNA: 3'- -GCCCGa--GCGGuGCCC---------------GGCGu-----CGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 30960 | 0.66 | 0.436809 |
Target: 5'- uCGaGGCcCGCCGCGacggcccGCCGCGG-CGCAa -3' miRNA: 3'- -GC-CCGaGCGGUGCc------CGGCGUCgGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 30322 | 0.66 | 0.436809 |
Target: 5'- -cGGCggaagUGCCgGCGcGGCUgGCGGCCGCGc -3' miRNA: 3'- gcCCGa----GCGG-UGC-CCGG-CGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 78215 | 0.66 | 0.436809 |
Target: 5'- cCGuGGCUggccUGCCGCucGCUcaGCAGCCGCAg -3' miRNA: 3'- -GC-CCGA----GCGGUGccCGG--CGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 29594 | 0.66 | 0.436809 |
Target: 5'- aGGGCU-GCCG-GGGCCaCAGCuCGUu -3' miRNA: 3'- gCCCGAgCGGUgCCCGGcGUCG-GCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 1520 | 0.66 | 0.43258 |
Target: 5'- uCGGGCgccagcuccagcgcgCGCCGCccGcaggccagguacaccGGCCGCAGCgGCGc -3' miRNA: 3'- -GCCCGa--------------GCGGUG--C---------------CCGGCGUCGgCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 118426 | 0.66 | 0.436809 |
Target: 5'- -uGGCUgucgcCGCCGCGGacGCCGCcGCgGCGc -3' miRNA: 3'- gcCCGA-----GCGGUGCC--CGGCGuCGgCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 106223 | 0.66 | 0.436809 |
Target: 5'- cCGcGGC-CGCCugGcGCgGCcGCCGCGc -3' miRNA: 3'- -GC-CCGaGCGGugCcCGgCGuCGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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