miRNA display CGI


Results 1 - 20 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 120253 0.65 0.44277
Target:  5'- cCGcGGCU-GCCACGccGGCCGUcuaccgcccgcccgAGCUGCGc -3'
miRNA:   3'- -GC-CCGAgCGGUGC--CCGGCG--------------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 80123 0.66 0.395624
Target:  5'- -aGGCU-GCuCGCGcGGCUGguGCCGCc -3'
miRNA:   3'- gcCCGAgCG-GUGC-CCGGCguCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 52835 0.66 0.398826
Target:  5'- uCGGGCUCGCgggCGCcuaccagaagcccgaGGGCgGCGG-CGCGa -3'
miRNA:   3'- -GCCCGAGCG---GUG---------------CCCGgCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 91970 0.66 0.403659
Target:  5'- cCGGGgaCacgGUCGC-GGCCGCcGCCGCGg -3'
miRNA:   3'- -GCCCgaG---CGGUGcCCGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 61795 0.66 0.403659
Target:  5'- uCGGGCgcgucCGCCAUGGcGCCgGCGcucuGCaCGCGc -3'
miRNA:   3'- -GCCCGa----GCGGUGCC-CGG-CGU----CG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 58815 0.66 0.403659
Target:  5'- cCGaGCUCGCCgacACGGGCCugcucgacuacaGCGagauccagcGCCGCAa -3'
miRNA:   3'- -GCcCGAGCGG---UGCCCGG------------CGU---------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 78767 0.66 0.403659
Target:  5'- cCGGcGCU-GCCcccCGacGCCGCGGCCGCGc -3'
miRNA:   3'- -GCC-CGAgCGGu--GCc-CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 121036 0.66 0.410162
Target:  5'- uGGGCgcgcugcUCGCCGCcgcggcaGGGCUGCccacgcccgcGCCGCGg -3'
miRNA:   3'- gCCCG-------AGCGGUG-------CCCGGCGu---------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 33884 0.66 0.395624
Target:  5'- gCGGGCggCGCUGCGcgacGGCCG--GCCGCu -3'
miRNA:   3'- -GCCCGa-GCGGUGC----CCGGCguCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 7437 0.66 0.398826
Target:  5'- uGGGCgUCGUCcgcggugcggccagcGCGGGgCGCcAGCUGCu -3'
miRNA:   3'- gCCCG-AGCGG---------------UGCCCgGCG-UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 70891 0.66 0.409346
Target:  5'- gCGGGCccggCGCUguuccugcggcugaGCGcGGCgGCGGCCGaCGg -3'
miRNA:   3'- -GCCCGa---GCGG--------------UGC-CCGgCGUCGGC-GU- -5'
23567 5' -66.4 NC_005261.1 + 34276 0.66 0.395624
Target:  5'- gGcGGC-CGCCGC-GGUCGC-GCCGCu -3'
miRNA:   3'- gC-CCGaGCGGUGcCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 7665 0.66 0.395624
Target:  5'- gCGGcGCUucCGCCcgGCGGGCCGCccAGCagauaaaaCGCGa -3'
miRNA:   3'- -GCC-CGA--GCGG--UGCCCGGCG--UCG--------GCGU- -5'
23567 5' -66.4 NC_005261.1 + 4351 0.66 0.403659
Target:  5'- gCGGGCUUGCgCAgaccacagguaGGcGCgGCAGUCGCGc -3'
miRNA:   3'- -GCCCGAGCG-GUg----------CC-CGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 73723 0.66 0.403659
Target:  5'- aGGaGC-CGcCCGCGGGCCccgaGCAcCCGCGc -3'
miRNA:   3'- gCC-CGaGC-GGUGCCCGG----CGUcGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 18648 0.66 0.411798
Target:  5'- gGGGCg-GCCACGGucucgcGCuCGCAG-CGCAu -3'
miRNA:   3'- gCCCGagCGGUGCC------CG-GCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 75058 0.66 0.403659
Target:  5'- gCGGGCgUGUCGCGGaGCaCGUcggacacggAGCUGCAg -3'
miRNA:   3'- -GCCCGaGCGGUGCC-CG-GCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 135798 0.66 0.411798
Target:  5'- aGGcGCUgGCCgagaucGCGGcCCGCcGCCGCGc -3'
miRNA:   3'- gCC-CGAgCGG------UGCCcGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 73901 0.66 0.395624
Target:  5'- gCGGGCccUGaCGCGGGCaCGgcuaCGGCCGCGa -3'
miRNA:   3'- -GCCCGa-GCgGUGCCCG-GC----GUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 36394 0.66 0.403659
Target:  5'- gCGGGCgCGCgGCGGaGau-CAGCCGCGc -3'
miRNA:   3'- -GCCCGaGCGgUGCC-CggcGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.