Results 1 - 20 of 919 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 120253 | 0.65 | 0.44277 |
Target: 5'- cCGcGGCU-GCCACGccGGCCGUcuaccgcccgcccgAGCUGCGc -3' miRNA: 3'- -GC-CCGAgCGGUGC--CCGGCG--------------UCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 80123 | 0.66 | 0.395624 |
Target: 5'- -aGGCU-GCuCGCGcGGCUGguGCCGCc -3' miRNA: 3'- gcCCGAgCG-GUGC-CCGGCguCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 52835 | 0.66 | 0.398826 |
Target: 5'- uCGGGCUCGCgggCGCcuaccagaagcccgaGGGCgGCGG-CGCGa -3' miRNA: 3'- -GCCCGAGCG---GUG---------------CCCGgCGUCgGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 91970 | 0.66 | 0.403659 |
Target: 5'- cCGGGgaCacgGUCGC-GGCCGCcGCCGCGg -3' miRNA: 3'- -GCCCgaG---CGGUGcCCGGCGuCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 61795 | 0.66 | 0.403659 |
Target: 5'- uCGGGCgcgucCGCCAUGGcGCCgGCGcucuGCaCGCGc -3' miRNA: 3'- -GCCCGa----GCGGUGCC-CGG-CGU----CG-GCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 58815 | 0.66 | 0.403659 |
Target: 5'- cCGaGCUCGCCgacACGGGCCugcucgacuacaGCGagauccagcGCCGCAa -3' miRNA: 3'- -GCcCGAGCGG---UGCCCGG------------CGU---------CGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 78767 | 0.66 | 0.403659 |
Target: 5'- cCGGcGCU-GCCcccCGacGCCGCGGCCGCGc -3' miRNA: 3'- -GCC-CGAgCGGu--GCc-CGGCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 121036 | 0.66 | 0.410162 |
Target: 5'- uGGGCgcgcugcUCGCCGCcgcggcaGGGCUGCccacgcccgcGCCGCGg -3' miRNA: 3'- gCCCG-------AGCGGUG-------CCCGGCGu---------CGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 33884 | 0.66 | 0.395624 |
Target: 5'- gCGGGCggCGCUGCGcgacGGCCG--GCCGCu -3' miRNA: 3'- -GCCCGa-GCGGUGC----CCGGCguCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 7437 | 0.66 | 0.398826 |
Target: 5'- uGGGCgUCGUCcgcggugcggccagcGCGGGgCGCcAGCUGCu -3' miRNA: 3'- gCCCG-AGCGG---------------UGCCCgGCG-UCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 70891 | 0.66 | 0.409346 |
Target: 5'- gCGGGCccggCGCUguuccugcggcugaGCGcGGCgGCGGCCGaCGg -3' miRNA: 3'- -GCCCGa---GCGG--------------UGC-CCGgCGUCGGC-GU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 34276 | 0.66 | 0.395624 |
Target: 5'- gGcGGC-CGCCGC-GGUCGC-GCCGCu -3' miRNA: 3'- gC-CCGaGCGGUGcCCGGCGuCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 7665 | 0.66 | 0.395624 |
Target: 5'- gCGGcGCUucCGCCcgGCGGGCCGCccAGCagauaaaaCGCGa -3' miRNA: 3'- -GCC-CGA--GCGG--UGCCCGGCG--UCG--------GCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 4351 | 0.66 | 0.403659 |
Target: 5'- gCGGGCUUGCgCAgaccacagguaGGcGCgGCAGUCGCGc -3' miRNA: 3'- -GCCCGAGCG-GUg----------CC-CGgCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 73723 | 0.66 | 0.403659 |
Target: 5'- aGGaGC-CGcCCGCGGGCCccgaGCAcCCGCGc -3' miRNA: 3'- gCC-CGaGC-GGUGCCCGG----CGUcGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 18648 | 0.66 | 0.411798 |
Target: 5'- gGGGCg-GCCACGGucucgcGCuCGCAG-CGCAu -3' miRNA: 3'- gCCCGagCGGUGCC------CG-GCGUCgGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 75058 | 0.66 | 0.403659 |
Target: 5'- gCGGGCgUGUCGCGGaGCaCGUcggacacggAGCUGCAg -3' miRNA: 3'- -GCCCGaGCGGUGCC-CG-GCG---------UCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 135798 | 0.66 | 0.411798 |
Target: 5'- aGGcGCUgGCCgagaucGCGGcCCGCcGCCGCGc -3' miRNA: 3'- gCC-CGAgCGG------UGCCcGGCGuCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 73901 | 0.66 | 0.395624 |
Target: 5'- gCGGGCccUGaCGCGGGCaCGgcuaCGGCCGCGa -3' miRNA: 3'- -GCCCGa-GCgGUGCCCG-GC----GUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 36394 | 0.66 | 0.403659 |
Target: 5'- gCGGGCgCGCgGCGGaGau-CAGCCGCGc -3' miRNA: 3'- -GCCCGaGCGgUGCC-CggcGUCGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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