miRNA display CGI


Results 1 - 20 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 123423 1.07 0.000401
Target:  5'- gCGGGCUCGCCACGGGCCGCAGCCGCAg -3'
miRNA:   3'- -GCCCGAGCGGUGCCCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 66618 0.84 0.024989
Target:  5'- cCGGGCccgCGCC-CGGGCCGCGGCgGCGg -3'
miRNA:   3'- -GCCCGa--GCGGuGCCCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 105201 0.83 0.026798
Target:  5'- -aGGCUCGUCcgcuuucccgccgcGCGGGCCGCGGCCGCGg -3'
miRNA:   3'- gcCCGAGCGG--------------UGCCCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 126289 0.82 0.02995
Target:  5'- cCGGGCgagcCGCCGCGGcgcgggccGCCGCAGCCGCc -3'
miRNA:   3'- -GCCCGa---GCGGUGCC--------CGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 21772 0.82 0.02995
Target:  5'- cCGGGCgagcCGCCGCGGcgcgggccGCCGCAGCCGCc -3'
miRNA:   3'- -GCCCGa---GCGGUGCC--------CGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 97101 0.82 0.034965
Target:  5'- cCGGGggCGCCAgcCGGGCCGCGGCCGgAg -3'
miRNA:   3'- -GCCCgaGCGGU--GCCCGGCGUCGGCgU- -5'
23567 5' -66.4 NC_005261.1 + 115484 0.81 0.041864
Target:  5'- gCGGGCUCgGCCGCGGcggcgcGCCGCAGCCcccGCAc -3'
miRNA:   3'- -GCCCGAG-CGGUGCC------CGGCGUCGG---CGU- -5'
23567 5' -66.4 NC_005261.1 + 33367 0.8 0.046387
Target:  5'- cCGGGCcgCGCCgggcuGCGGGCCGCcgcAGCCGCc -3'
miRNA:   3'- -GCCCGa-GCGG-----UGCCCGGCG---UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 14962 0.8 0.042952
Target:  5'- gCGGGCgUGCCugGGGCgacugCGCGGCCGCGc -3'
miRNA:   3'- -GCCCGaGCGGugCCCG-----GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 118175 0.8 0.044069
Target:  5'- gGGGCUUGCCGucUGGGCCGCGGgccCCGCGc -3'
miRNA:   3'- gCCCGAGCGGU--GCCCGGCGUC---GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 213 0.8 0.046387
Target:  5'- cCGGGCcgCGCCgggcuGCGGGCCGCcgcAGCCGCc -3'
miRNA:   3'- -GCCCGa-GCGG-----UGCCCGGCG---UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 137884 0.8 0.046387
Target:  5'- cCGGGCcgCGCCgggcuGCGGGCCGCcgcAGCCGCc -3'
miRNA:   3'- -GCCCGa-GCGG-----UGCCCGGCG---UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 102301 0.79 0.054077
Target:  5'- gCGGGUcguaGCCGCGcGCCGCGGCCGCGg -3'
miRNA:   3'- -GCCCGag--CGGUGCcCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 125922 0.79 0.050088
Target:  5'- gGGGCUCGCCACGcGCacgGUAGCCGCu -3'
miRNA:   3'- gCCCGAGCGGUGCcCGg--CGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 3531 0.79 0.052714
Target:  5'- uGGGCgCGCCGC-GGUCGCAGUCGCAg -3'
miRNA:   3'- gCCCGaGCGGUGcCCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 125723 0.79 0.051385
Target:  5'- gCGGGCUCGgCugGGGCCGCcgcaagggGGCCGgGg -3'
miRNA:   3'- -GCCCGAGCgGugCCCGGCG--------UCGGCgU- -5'
23567 5' -66.4 NC_005261.1 + 38920 0.79 0.055051
Target:  5'- gCGGGCccgcgCGCCaagccggcggccggGCGGGCCGCGGCgCGCGg -3'
miRNA:   3'- -GCCCGa----GCGG--------------UGCCCGGCGUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 105112 0.79 0.055473
Target:  5'- gGGGCUUGCCcgcgcgggcGCGGGCCGCcGGCgCGCGc -3'
miRNA:   3'- gCCCGAGCGG---------UGCCCGGCG-UCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 28583 0.79 0.054077
Target:  5'- uCGGGUUaggUGUCugGGGCgGCGGCCGCAa -3'
miRNA:   3'- -GCCCGA---GCGGugCCCGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 84512 0.79 0.055473
Target:  5'- gCGGGCgCGCCGCagcuGGCCGCGGCgCGCGg -3'
miRNA:   3'- -GCCCGaGCGGUGc---CCGGCGUCG-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.