Results 1 - 20 of 919 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 123423 | 1.07 | 0.000401 |
Target: 5'- gCGGGCUCGCCACGGGCCGCAGCCGCAg -3' miRNA: 3'- -GCCCGAGCGGUGCCCGGCGUCGGCGU- -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 66618 | 0.84 | 0.024989 |
Target: 5'- cCGGGCccgCGCC-CGGGCCGCGGCgGCGg -3' miRNA: 3'- -GCCCGa--GCGGuGCCCGGCGUCGgCGU- -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 105201 | 0.83 | 0.026798 |
Target: 5'- -aGGCUCGUCcgcuuucccgccgcGCGGGCCGCGGCCGCGg -3' miRNA: 3'- gcCCGAGCGG--------------UGCCCGGCGUCGGCGU- -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 97101 | 0.82 | 0.034965 |
Target: 5'- cCGGGggCGCCAgcCGGGCCGCGGCCGgAg -3' miRNA: 3'- -GCCCgaGCGGU--GCCCGGCGUCGGCgU- -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 21772 | 0.82 | 0.02995 |
Target: 5'- cCGGGCgagcCGCCGCGGcgcgggccGCCGCAGCCGCc -3' miRNA: 3'- -GCCCGa---GCGGUGCC--------CGGCGUCGGCGu -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 126289 | 0.82 | 0.02995 |
Target: 5'- cCGGGCgagcCGCCGCGGcgcgggccGCCGCAGCCGCc -3' miRNA: 3'- -GCCCGa---GCGGUGCC--------CGGCGUCGGCGu -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 115484 | 0.81 | 0.041864 |
Target: 5'- gCGGGCUCgGCCGCGGcggcgcGCCGCAGCCcccGCAc -3' miRNA: 3'- -GCCCGAG-CGGUGCC------CGGCGUCGG---CGU- -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 137884 | 0.8 | 0.046387 |
Target: 5'- cCGGGCcgCGCCgggcuGCGGGCCGCcgcAGCCGCc -3' miRNA: 3'- -GCCCGa-GCGG-----UGCCCGGCG---UCGGCGu -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 213 | 0.8 | 0.046387 |
Target: 5'- cCGGGCcgCGCCgggcuGCGGGCCGCcgcAGCCGCc -3' miRNA: 3'- -GCCCGa-GCGG-----UGCCCGGCG---UCGGCGu -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 118175 | 0.8 | 0.044069 |
Target: 5'- gGGGCUUGCCGucUGGGCCGCGGgccCCGCGc -3' miRNA: 3'- gCCCGAGCGGU--GCCCGGCGUC---GGCGU- -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 14962 | 0.8 | 0.042952 |
Target: 5'- gCGGGCgUGCCugGGGCgacugCGCGGCCGCGc -3' miRNA: 3'- -GCCCGaGCGGugCCCG-----GCGUCGGCGU- -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 33367 | 0.8 | 0.046387 |
Target: 5'- cCGGGCcgCGCCgggcuGCGGGCCGCcgcAGCCGCc -3' miRNA: 3'- -GCCCGa-GCGG-----UGCCCGGCG---UCGGCGu -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 28583 | 0.79 | 0.054077 |
Target: 5'- uCGGGUUaggUGUCugGGGCgGCGGCCGCAa -3' miRNA: 3'- -GCCCGA---GCGGugCCCGgCGUCGGCGU- -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 84512 | 0.79 | 0.055473 |
Target: 5'- gCGGGCgCGCCGCagcuGGCCGCGGCgCGCGg -3' miRNA: 3'- -GCCCGaGCGGUGc---CCGGCGUCG-GCGU- -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 20545 | 0.79 | 0.056905 |
Target: 5'- aGGGCcggccUCGCCGCGGGCC-CGGCCGg- -3' miRNA: 3'- gCCCG-----AGCGGUGCCCGGcGUCGGCgu -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 3531 | 0.79 | 0.052714 |
Target: 5'- uGGGCgCGCCGC-GGUCGCAGUCGCAg -3' miRNA: 3'- gCCCGaGCGGUGcCCGGCGUCGGCGU- -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 38920 | 0.79 | 0.055051 |
Target: 5'- gCGGGCccgcgCGCCaagccggcggccggGCGGGCCGCGGCgCGCGg -3' miRNA: 3'- -GCCCGa----GCGG--------------UGCCCGGCGUCG-GCGU- -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 105112 | 0.79 | 0.055473 |
Target: 5'- gGGGCUUGCCcgcgcgggcGCGGGCCGCcGGCgCGCGc -3' miRNA: 3'- gCCCGAGCGG---------UGCCCGGCG-UCG-GCGU- -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 125723 | 0.79 | 0.051385 |
Target: 5'- gCGGGCUCGgCugGGGCCGCcgcaagggGGCCGgGg -3' miRNA: 3'- -GCCCGAGCgGugCCCGGCG--------UCGGCgU- -5' |
|||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 115401 | 0.79 | 0.050088 |
Target: 5'- gCGGGUcgUCGaCCGCGGGCgGCAGCCGgGg -3' miRNA: 3'- -GCCCG--AGC-GGUGCCCGgCGUCGGCgU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home