miRNA display CGI


Results 1 - 20 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 107889 0.76 0.094265
Target:  5'- aGGGC-CGCgaGCGcGGCCGcCAGCCGCGc -3'
miRNA:   3'- gCCCGaGCGg-UGC-CCGGC-GUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 20145 0.77 0.073335
Target:  5'- gCGGGC-CGCCagcagacgaGCGcGGCUGCGGCCGCu -3'
miRNA:   3'- -GCCCGaGCGG---------UGC-CCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 102551 0.77 0.075209
Target:  5'- gGGGCUCGCCgGCgGGGgUGCGGCCgGCAg -3'
miRNA:   3'- gCCCGAGCGG-UG-CCCgGCGUCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 96608 0.77 0.075209
Target:  5'- -aGG-UCGCCGaGGGCCGCAGCCGCu -3'
miRNA:   3'- gcCCgAGCGGUgCCCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 127702 0.77 0.077129
Target:  5'- gGGGCgacagcgagcgCGCCGCGGGgcCCGCAGCgGCGg -3'
miRNA:   3'- gCCCGa----------GCGGUGCCC--GGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 75211 0.77 0.08111
Target:  5'- gCGGGCgccggCGCCcgcGCGGG-CGCGGCCGCc -3'
miRNA:   3'- -GCCCGa----GCGG---UGCCCgGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 26605 0.76 0.085288
Target:  5'- gCGGGCggcggCGgCACGGcGCCGCAGCC-CAg -3'
miRNA:   3'- -GCCCGa----GCgGUGCC-CGGCGUCGGcGU- -5'
23567 5' -66.4 NC_005261.1 + 102312 0.76 0.09194
Target:  5'- uGGGCUgCgGCgCugGGGCCGCGcuGCCGCGg -3'
miRNA:   3'- gCCCGA-G-CG-GugCCCGGCGU--CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 5642 0.76 0.09403
Target:  5'- cCGGGCcgggCGuCCGCGGGCgcgccgacgucuuCGCAGCCGUAc -3'
miRNA:   3'- -GCCCGa---GC-GGUGCCCG-------------GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 123862 0.78 0.066277
Target:  5'- gCGGGCcaccgCGCCGCcccGGCCGCGGCUGCu -3'
miRNA:   3'- -GCCCGa----GCGGUGc--CCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 133760 0.78 0.064618
Target:  5'- cCGcGGCgccgCGCgACGGGCCGCcGCCGCu -3'
miRNA:   3'- -GC-CCGa---GCGgUGCCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 133295 0.78 0.061419
Target:  5'- uGGGCcgCGgCGCGGGCgcuCGCGGCCGCGg -3'
miRNA:   3'- gCCCGa-GCgGUGCCCG---GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 126289 0.82 0.02995
Target:  5'- cCGGGCgagcCGCCGCGGcgcgggccGCCGCAGCCGCc -3'
miRNA:   3'- -GCCCGa---GCGGUGCC--------CGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 213 0.8 0.046387
Target:  5'- cCGGGCcgCGCCgggcuGCGGGCCGCcgcAGCCGCc -3'
miRNA:   3'- -GCCCGa-GCGG-----UGCCCGGCG---UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 137884 0.8 0.046387
Target:  5'- cCGGGCcgCGCCgggcuGCGGGCCGCcgcAGCCGCc -3'
miRNA:   3'- -GCCCGa-GCGG-----UGCCCGGCG---UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 3531 0.79 0.052714
Target:  5'- uGGGCgCGCCGC-GGUCGCAGUCGCAg -3'
miRNA:   3'- gCCCGaGCGGUGcCCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 28583 0.79 0.054077
Target:  5'- uCGGGUUaggUGUCugGGGCgGCGGCCGCAa -3'
miRNA:   3'- -GCCCGA---GCGGugCCCGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 84512 0.79 0.055473
Target:  5'- gCGGGCgCGCCGCagcuGGCCGCGGCgCGCGg -3'
miRNA:   3'- -GCCCGaGCGGUGc---CCGGCGUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 20545 0.79 0.056905
Target:  5'- aGGGCcggccUCGCCGCGGGCC-CGGCCGg- -3'
miRNA:   3'- gCCCG-----AGCGGUGCCCGGcGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 99614 0.78 0.061263
Target:  5'- gCGGGCUCgGCCGCGGccaacacccgccaGCCGCGGgCCGCc -3'
miRNA:   3'- -GCCCGAG-CGGUGCC-------------CGGCGUC-GGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.