miRNA display CGI


Results 1 - 20 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 94 0.69 0.269504
Target:  5'- gGGGCgCGCCccCGGGCC-CcGCCGCc -3'
miRNA:   3'- gCCCGaGCGGu-GCCCGGcGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 143 0.69 0.257104
Target:  5'- uGGGCacccCGUCGCGGGaccaggaCCGCuGCCGCc -3'
miRNA:   3'- gCCCGa---GCGGUGCCC-------GGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 188 0.69 0.275576
Target:  5'- uGGuGCUCccgggGCCAgCGGuGCCGCcGCCGCc -3'
miRNA:   3'- gCC-CGAG-----CGGU-GCC-CGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 213 0.8 0.046387
Target:  5'- cCGGGCcgCGCCgggcuGCGGGCCGCcgcAGCCGCc -3'
miRNA:   3'- -GCCCGa-GCGG-----UGCCCGGCG---UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 232 0.73 0.146802
Target:  5'- gCGGGCccCGCgaGCGGGCC-CGGCUGCGg -3'
miRNA:   3'- -GCCCGa-GCGg-UGCCCGGcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 316 0.68 0.298994
Target:  5'- cCGGGCcCGCuCGCgGGGCCcgcgagcaccagggGCGGCgGCGg -3'
miRNA:   3'- -GCCCGaGCG-GUG-CCCGG--------------CGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 434 0.67 0.349634
Target:  5'- gGGGCggCGCCggcGCGGGCgGCGGggcCCGgGg -3'
miRNA:   3'- gCCCGa-GCGG---UGCCCGgCGUC---GGCgU- -5'
23567 5' -66.4 NC_005261.1 + 612 0.67 0.342349
Target:  5'- aGGGCgagUGCCcgacgcaggggAUGuGGCgGCGGCCGCc -3'
miRNA:   3'- gCCCGa--GCGG-----------UGC-CCGgCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 1028 0.68 0.307581
Target:  5'- uGGGCUUuugcggaggGCgGCGGGCgGCGGCguuaGCGg -3'
miRNA:   3'- gCCCGAG---------CGgUGCCCGgCGUCGg---CGU- -5'
23567 5' -66.4 NC_005261.1 + 1174 0.67 0.349634
Target:  5'- -cGGCccgCGCCGCggccgGGGCCGgGGCCGg- -3'
miRNA:   3'- gcCCGa--GCGGUG-----CCCGGCgUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 1298 0.7 0.240753
Target:  5'- gGGGCUccCGUCGCcGGCgGCGGCaCGCGc -3'
miRNA:   3'- gCCCGA--GCGGUGcCCGgCGUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 1397 0.73 0.136488
Target:  5'- cCGGGC--GCCGC-GGCCGCGGCgGCGg -3'
miRNA:   3'- -GCCCGagCGGUGcCCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 1520 0.66 0.43258
Target:  5'- uCGGGCgccagcuccagcgcgCGCCGCccGcaggccagguacaccGGCCGCAGCgGCGc -3'
miRNA:   3'- -GCCCGa--------------GCGGUG--C---------------CCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 1730 0.68 0.294448
Target:  5'- aCGGGCacCGCggugCGCGGGCC-CAGgCGCGu -3'
miRNA:   3'- -GCCCGa-GCG----GUGCCCGGcGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 1782 0.67 0.364534
Target:  5'- -uGGC--GCCGCGGcagaGCCGCAGCgGCGg -3'
miRNA:   3'- gcCCGagCGGUGCC----CGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 1859 0.68 0.300959
Target:  5'- cCGGGCccgaagacgCGCCGCGaGGCCaGCAcgGCgCGCGc -3'
miRNA:   3'- -GCCCGa--------GCGGUGC-CCGG-CGU--CG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 1923 0.74 0.120769
Target:  5'- gCGcGGCgcacugCGCCGCGGGCagcacCGCGGCgCGCAg -3'
miRNA:   3'- -GC-CCGa-----GCGGUGCCCG-----GCGUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 2265 0.69 0.275576
Target:  5'- cCGGcGCUCGuCCucgcCGGGCgGC-GCCGCc -3'
miRNA:   3'- -GCC-CGAGC-GGu---GCCCGgCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 2413 0.7 0.229988
Target:  5'- gCGGGC-C-CCGCGcGGCgGCGGgCCGCGa -3'
miRNA:   3'- -GCCCGaGcGGUGC-CCGgCGUC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 2483 0.7 0.219632
Target:  5'- aGGGCUCGgggaagaGCGGGugguCCGCgAGCCGCGc -3'
miRNA:   3'- gCCCGAGCgg-----UGCCC----GGCG-UCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.