miRNA display CGI


Results 1 - 20 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 138117 0.67 0.349634
Target:  5'- gGGGCggCGCCggcGCGGGCgGCGGggcCCGgGg -3'
miRNA:   3'- gCCCGa-GCGG---UGCCCGgCGUC---GGCgU- -5'
23567 5' -66.4 NC_005261.1 + 137999 0.68 0.298994
Target:  5'- cCGGGCcCGCuCGCgGGGCCcgcgagcaccagggGCGGCgGCGg -3'
miRNA:   3'- -GCCCGaGCG-GUG-CCCGG--------------CGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 137915 0.73 0.146802
Target:  5'- gCGGGCccCGCgaGCGGGCC-CGGCUGCGg -3'
miRNA:   3'- -GCCCGa-GCGg-UGCCCGGcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 137884 0.8 0.046387
Target:  5'- cCGGGCcgCGCCgggcuGCGGGCCGCcgcAGCCGCc -3'
miRNA:   3'- -GCCCGa-GCGG-----UGCCCGGCG---UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 137871 0.69 0.275576
Target:  5'- uGGuGCUCccgggGCCAgCGGuGCCGCcGCCGCc -3'
miRNA:   3'- gCC-CGAG-----CGGU-GCC-CGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 137814 0.69 0.257104
Target:  5'- uGGGCacccCGUCGCGGGaccaggaCCGCuGCCGCc -3'
miRNA:   3'- gCCCGa---GCGGUGCCC-------GGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 137777 0.69 0.269504
Target:  5'- gGGGCgCGCCccCGGGCC-CcGCCGCc -3'
miRNA:   3'- gCCCGaGCGGu-GCCCGGcGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 137587 0.67 0.387692
Target:  5'- cCGGGgaCGCgGCGcuGGCgGCcGCCGCc -3'
miRNA:   3'- -GCCCgaGCGgUGC--CCGgCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 137429 0.66 0.420037
Target:  5'- gGGGCgcgCGUgGgGGGCgGCGG-CGCGg -3'
miRNA:   3'- gCCCGa--GCGgUgCCCGgCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 137152 0.75 0.099083
Target:  5'- cCGGGCUCGCCcuggaGCGGGgccagccccCCGC-GCCGCu -3'
miRNA:   3'- -GCCCGAGCGG-----UGCCC---------GGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 137033 0.71 0.209678
Target:  5'- gGGGUccgCGCCGCGcccggccccGGCCcCGGCCGCGg -3'
miRNA:   3'- gCCCGa--GCGGUGC---------CCGGcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 136996 0.67 0.379866
Target:  5'- uCGGGCUUcCCG-GGGCCGgcgaCGGCgGCAu -3'
miRNA:   3'- -GCCCGAGcGGUgCCCGGC----GUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 136910 0.7 0.235319
Target:  5'- uGGuGUggGCCGCGcGGCCGCGG-CGCAu -3'
miRNA:   3'- gCC-CGagCGGUGC-CCGGCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 136816 0.75 0.099083
Target:  5'- gCGGGCgccgccccCGCCGCc-GCCGCGGCCGCGg -3'
miRNA:   3'- -GCCCGa-------GCGGUGccCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 136794 0.72 0.161658
Target:  5'- gCGGuGCagGCCagugGCGGGCuCGUAGCCGUAg -3'
miRNA:   3'- -GCC-CGagCGG----UGCCCG-GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 136704 0.67 0.382984
Target:  5'- gCGGGCggCGCgCGCuGGaGCUGCgcccgacgagcugccGGCCGCGg -3'
miRNA:   3'- -GCCCGa-GCG-GUG-CC-CGGCG---------------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 136666 0.73 0.157822
Target:  5'- gGGGCUCGgCGCGccGCUGCGGCCGg- -3'
miRNA:   3'- gCCCGAGCgGUGCc-CGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 136444 0.66 0.395624
Target:  5'- gCGGGCgUCG-CAgGGGCaCGCGGCaGCc -3'
miRNA:   3'- -GCCCG-AGCgGUgCCCG-GCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 136439 0.66 0.428375
Target:  5'- gGGGCgccgcCGCUGCGGcucuGCCGCGG-CGCc -3'
miRNA:   3'- gCCCGa----GCGGUGCC----CGGCGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 136403 0.71 0.214606
Target:  5'- gGGGCggaCGUgGuguCGGaGCCGCAGUCGCAg -3'
miRNA:   3'- gCCCGa--GCGgU---GCC-CGGCGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.