miRNA display CGI


Results 21 - 40 of 919 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 2584 0.69 0.275576
Target:  5'- cCGGGCggcaCGCgGCGGaaGCCGCcgucggcggcggGGCCGCc -3'
miRNA:   3'- -GCCCGa---GCGgUGCC--CGGCG------------UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 2637 0.69 0.275576
Target:  5'- gGGGCccaGCaCGCGGGCgGgCAGCgGCGg -3'
miRNA:   3'- gCCCGag-CG-GUGCCCGgC-GUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 2753 0.7 0.246291
Target:  5'- gCGGGCcgUCGCgGCGGGCCucgaGGcCCGCc -3'
miRNA:   3'- -GCCCG--AGCGgUGCCCGGcg--UC-GGCGu -5'
23567 5' -66.4 NC_005261.1 + 2790 0.66 0.419208
Target:  5'- gGGGCU-GCCGCcggcggccgggagGGGCCggGCGGCCcCAg -3'
miRNA:   3'- gCCCGAgCGGUG-------------CCCGG--CGUCGGcGU- -5'
23567 5' -66.4 NC_005261.1 + 2891 0.66 0.436809
Target:  5'- gGGGCgaacCGCUcCGGGCCaaaguccaGCAcgGCCGCc -3'
miRNA:   3'- gCCCGa---GCGGuGCCCGG--------CGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 2988 0.68 0.314313
Target:  5'- gGGGCUCgGCCugGcGGCCcgGC-GCCGgGg -3'
miRNA:   3'- gCCCGAG-CGGugC-CCGG--CGuCGGCgU- -5'
23567 5' -66.4 NC_005261.1 + 3152 0.75 0.112163
Target:  5'- cCGGGCcgcgagccCGCCgccggaaagcgGCGGGCCGCuGCCGCc -3'
miRNA:   3'- -GCCCGa-------GCGG-----------UGCCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 3204 0.71 0.190933
Target:  5'- uCGGcCUCGCCGcCGcGGCCGCGugcgggcccGCCGCGc -3'
miRNA:   3'- -GCCcGAGCGGU-GC-CCGGCGU---------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 3372 0.76 0.094265
Target:  5'- aGGGC-CGCgaGCGcGGCCGcCAGCCGCGc -3'
miRNA:   3'- gCCCGaGCGg-UGC-CCGGC-GUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 3431 0.73 0.143287
Target:  5'- gCGGGCcagCGUCcaggcgggcgcGCGGGCCGCcgcGCCGCGc -3'
miRNA:   3'- -GCCCGa--GCGG-----------UGCCCGGCGu--CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 3479 0.68 0.307581
Target:  5'- --uGC-CGCCGCGGGUCGCGgguGCCGUc -3'
miRNA:   3'- gccCGaGCGGUGCCCGGCGU---CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 3492 0.66 0.436809
Target:  5'- gGGGCcacgguucgCGCCgccaGCGcGGCCGCcuccagcgcggcGGCCGCc -3'
miRNA:   3'- gCCCGa--------GCGG----UGC-CCGGCG------------UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 3531 0.79 0.052714
Target:  5'- uGGGCgCGCCGC-GGUCGCAGUCGCAg -3'
miRNA:   3'- gCCCGaGCGGUGcCCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 3543 0.66 0.411798
Target:  5'- uCGGcGCgcagCGCgGCGGG-CGCGgcGCCGCu -3'
miRNA:   3'- -GCC-CGa---GCGgUGCCCgGCGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 3576 0.67 0.346707
Target:  5'- aGGcGCgcgcgcuccaccgCGUCGCGGGCCGC-GCCaaGCAg -3'
miRNA:   3'- gCC-CGa------------GCGGUGCCCGGCGuCGG--CGU- -5'
23567 5' -66.4 NC_005261.1 + 3639 0.68 0.335174
Target:  5'- cCGGcgcuuuauGCUCGCCA--GGCCcgcccugcGCAGCCGCGg -3'
miRNA:   3'- -GCC--------CGAGCGGUgcCCGG--------CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 3640 0.71 0.201996
Target:  5'- cCGGGUgCGCCgcuagcgcgucuggaGCGcaGGCCGCGGCCgGCAg -3'
miRNA:   3'- -GCCCGaGCGG---------------UGC--CCGGCGUCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 3821 0.66 0.428375
Target:  5'- gCGcGCU-GCCGCGGGCC-CGGgCGCu -3'
miRNA:   3'- -GCcCGAgCGGUGCCCGGcGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 3853 0.68 0.320466
Target:  5'- gCGGcGCcggCGCCGCGcGGCCGgcgagcaCGGCgCGCAg -3'
miRNA:   3'- -GCC-CGa--GCGGUGC-CCGGC-------GUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 3937 0.76 0.094265
Target:  5'- cCGGGUagGCCAUGGGCgcguaCGCGcGCCGCAg -3'
miRNA:   3'- -GCCCGagCGGUGCCCG-----GCGU-CGGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.