miRNA display CGI


Results 21 - 40 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 107307 0.66 0.419208
Target:  5'- gGGGCU-GCCGCcggcggccgggagGGGCCggGCGGCCcCAg -3'
miRNA:   3'- gCCCGAgCGGUG-------------CCCGG--CGUCGGcGU- -5'
23567 5' -66.4 NC_005261.1 + 34276 0.66 0.395624
Target:  5'- gGcGGC-CGCCGC-GGUCGC-GCCGCu -3'
miRNA:   3'- gC-CCGaGCGGUGcCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 33884 0.66 0.395624
Target:  5'- gCGGGCggCGCUGCGcgacGGCCG--GCCGCu -3'
miRNA:   3'- -GCCCGa-GCGGUGC----CCGGCguCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 49638 0.66 0.411798
Target:  5'- uGGcGC-CGCCGggcCGGGCCuCGGCgGCGa -3'
miRNA:   3'- gCC-CGaGCGGU---GCCCGGcGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 88927 0.66 0.416729
Target:  5'- aGGGCUgcgcggcgcucacCGCCGCGGGCuucugcgccuuccuCGCGGaCGUg -3'
miRNA:   3'- gCCCGA-------------GCGGUGCCCG--------------GCGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 7437 0.66 0.398826
Target:  5'- uGGGCgUCGUCcgcggugcggccagcGCGGGgCGCcAGCUGCu -3'
miRNA:   3'- gCCCG-AGCGG---------------UGCCCgGCG-UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 121036 0.66 0.410162
Target:  5'- uGGGCgcgcugcUCGCCGCcgcggcaGGGCUGCccacgcccgcGCCGCGg -3'
miRNA:   3'- gCCCG-------AGCGGUG-------CCCGGCGu---------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 85489 0.66 0.415081
Target:  5'- gCGGGCcacuuccccgaucgCGCCGCGGcGCCGCAuCuCGUc -3'
miRNA:   3'- -GCCCGa-------------GCGGUGCC-CGGCGUcG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 38018 0.66 0.420037
Target:  5'- cCGaGCUCuaCGCgGGGCUGCuGGCCGCc -3'
miRNA:   3'- -GCcCGAGcgGUG-CCCGGCG-UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 75058 0.66 0.403659
Target:  5'- gCGGGCgUGUCGCGGaGCaCGUcggacacggAGCUGCAg -3'
miRNA:   3'- -GCCCGaGCGGUGCC-CG-GCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 117900 0.66 0.417555
Target:  5'- gCGGGCgUCGCUcgugcGCGGcucggggcccagucGCCGUuuuucuGCCGCAa -3'
miRNA:   3'- -GCCCG-AGCGG-----UGCC--------------CGGCGu-----CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 52835 0.66 0.398826
Target:  5'- uCGGGCUCGCgggCGCcuaccagaagcccgaGGGCgGCGG-CGCGa -3'
miRNA:   3'- -GCCCGAGCG---GUG---------------CCCGgCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 34712 0.66 0.420037
Target:  5'- gCGGcGgaUGCCGCGGacGCCGCcGuCCGCGg -3'
miRNA:   3'- -GCC-CgaGCGGUGCC--CGGCGuC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 108060 0.66 0.411798
Target:  5'- uCGGcGCgcagCGCgGCGGG-CGCGgcGCCGCu -3'
miRNA:   3'- -GCC-CGa---GCGgUGCCCgGCGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 36394 0.66 0.403659
Target:  5'- gCGGGCgCGCgGCGGaGau-CAGCCGCGc -3'
miRNA:   3'- -GCCCGaGCGgUGCC-CggcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 18648 0.66 0.411798
Target:  5'- gGGGCg-GCCACGGucucgcGCuCGCAG-CGCAu -3'
miRNA:   3'- gCCCGagCGGUGCC------CG-GCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 84224 0.66 0.420037
Target:  5'- aGcGCUCGCgGCGGcGCCuGUGcGCCGCGc -3'
miRNA:   3'- gCcCGAGCGgUGCC-CGG-CGU-CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 103503 0.66 0.420037
Target:  5'- cCGcGGC-CGCCAgGGGgCGCcGaCCGCu -3'
miRNA:   3'- -GC-CCGaGCGGUgCCCgGCGuC-GGCGu -5'
23567 5' -66.4 NC_005261.1 + 135798 0.66 0.411798
Target:  5'- aGGcGCUgGCCgagaucGCGGcCCGCcGCCGCGc -3'
miRNA:   3'- gCC-CGAgCGG------UGCCcGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 87098 0.66 0.411798
Target:  5'- gGGGCUuucgCGCCGaaugaucacaGcGGCCGCgacgucaaaGGCCGCGa -3'
miRNA:   3'- gCCCGA----GCGGUg---------C-CCGGCG---------UCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.