miRNA display CGI


Results 21 - 40 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 135798 0.66 0.411798
Target:  5'- aGGcGCUgGCCgagaucGCGGcCCGCcGCCGCGc -3'
miRNA:   3'- gCC-CGAgCGG------UGCCcGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 33884 0.66 0.395624
Target:  5'- gCGGGCggCGCUGCGcgacGGCCG--GCCGCu -3'
miRNA:   3'- -GCCCGa-GCGGUGC----CCGGCguCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 70891 0.66 0.409346
Target:  5'- gCGGGCccggCGCUguuccugcggcugaGCGcGGCgGCGGCCGaCGg -3'
miRNA:   3'- -GCCCGa---GCGG--------------UGC-CCGgCGUCGGC-GU- -5'
23567 5' -66.4 NC_005261.1 + 108060 0.66 0.411798
Target:  5'- uCGGcGCgcagCGCgGCGGG-CGCGgcGCCGCu -3'
miRNA:   3'- -GCC-CGa---GCGgUGCCCgGCGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 99567 0.66 0.411798
Target:  5'- -uGGCggGCC-CGGGcCCGCAcccGCCGCu -3'
miRNA:   3'- gcCCGagCGGuGCCC-GGCGU---CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 117900 0.66 0.417555
Target:  5'- gCGGGCgUCGCUcgugcGCGGcucggggcccagucGCCGUuuuucuGCCGCAa -3'
miRNA:   3'- -GCCCG-AGCGG-----UGCC--------------CGGCGu-----CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 85489 0.66 0.415081
Target:  5'- gCGGGCcacuuccccgaucgCGCCGCGGcGCCGCAuCuCGUc -3'
miRNA:   3'- -GCCCGa-------------GCGGUGCC-CGGCGUcG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 121036 0.66 0.410162
Target:  5'- uGGGCgcgcugcUCGCCGCcgcggcaGGGCUGCccacgcccgcGCCGCGg -3'
miRNA:   3'- gCCCG-------AGCGGUG-------CCCGGCGu---------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 91970 0.66 0.403659
Target:  5'- cCGGGgaCacgGUCGC-GGCCGCcGCCGCGg -3'
miRNA:   3'- -GCCCgaG---CGGUGcCCGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 4351 0.66 0.403659
Target:  5'- gCGGGCUUGCgCAgaccacagguaGGcGCgGCAGUCGCGc -3'
miRNA:   3'- -GCCCGAGCG-GUg----------CC-CGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 78767 0.66 0.403659
Target:  5'- cCGGcGCU-GCCcccCGacGCCGCGGCCGCGc -3'
miRNA:   3'- -GCC-CGAgCGGu--GCc-CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 80123 0.66 0.395624
Target:  5'- -aGGCU-GCuCGCGcGGCUGguGCCGCc -3'
miRNA:   3'- gcCCGAgCG-GUGC-CCGGCguCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 78845 0.66 0.411798
Target:  5'- cCGGGCUCGgCGcCGuGG-CGCGGgCGCu -3'
miRNA:   3'- -GCCCGAGCgGU-GC-CCgGCGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 73901 0.66 0.395624
Target:  5'- gCGGGCccUGaCGCGGGCaCGgcuaCGGCCGCGa -3'
miRNA:   3'- -GCCCGa-GCgGUGCCCG-GC----GUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 18648 0.66 0.411798
Target:  5'- gGGGCg-GCCACGGucucgcGCuCGCAG-CGCAu -3'
miRNA:   3'- gCCCGagCGGUGCC------CG-GCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 71912 0.66 0.394826
Target:  5'- uGGGCUgcacggcCGCCuCGguGGCCGU-GCCGCGc -3'
miRNA:   3'- gCCCGA-------GCGGuGC--CCGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 36394 0.66 0.403659
Target:  5'- gCGGGCgCGCgGCGGaGau-CAGCCGCGc -3'
miRNA:   3'- -GCCCGaGCGgUGCC-CggcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 31280 0.66 0.420037
Target:  5'- gCGGaGCgCGCC-CGGGCCGaGGUgCGCGu -3'
miRNA:   3'- -GCC-CGaGCGGuGCCCGGCgUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 49638 0.66 0.411798
Target:  5'- uGGcGC-CGCCGggcCGGGCCuCGGCgGCGa -3'
miRNA:   3'- gCC-CGaGCGGU---GCCCGGcGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 7665 0.66 0.395624
Target:  5'- gCGGcGCUucCGCCcgGCGGGCCGCccAGCagauaaaaCGCGa -3'
miRNA:   3'- -GCC-CGA--GCGG--UGCCCGGCG--UCG--------GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.