miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 3' -55.6 NC_005261.1 + 122653 1.08 0.003189
Target:  5'- gCGCGUACGUGGGCGCGAAGAGCAUCAc -3'
miRNA:   3'- -GCGCAUGCACCCGCGCUUCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 50997 0.79 0.271167
Target:  5'- gGCGgcGCGUGGGCGCGGcgGGAGC-UCGg -3'
miRNA:   3'- gCGCa-UGCACCCGCGCU--UCUCGuAGU- -5'
23568 3' -55.6 NC_005261.1 + 29301 0.78 0.284335
Target:  5'- gGCGUGCGUGGGCGUGcuGGGCccCGa -3'
miRNA:   3'- gCGCAUGCACCCGCGCuuCUCGuaGU- -5'
23568 3' -55.6 NC_005261.1 + 58456 0.76 0.390582
Target:  5'- aCGCGUACGacucgccGGGCGCGuauGAGCcgCAg -3'
miRNA:   3'- -GCGCAUGCa------CCCGCGCuu-CUCGuaGU- -5'
23568 3' -55.6 NC_005261.1 + 32311 0.75 0.452599
Target:  5'- gGCGcgGCGUGGGCGCGcgcGAGCGg-- -3'
miRNA:   3'- gCGCa-UGCACCCGCGCuu-CUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 87034 0.75 0.461893
Target:  5'- gCGCGccCGgGGGCGUGgcGAGCGUCGc -3'
miRNA:   3'- -GCGCauGCaCCCGCGCuuCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 127564 0.75 0.452599
Target:  5'- aCGCGUGCGUcggcccgcaccaGGGCGCccuGGGCGUCu -3'
miRNA:   3'- -GCGCAUGCA------------CCCGCGcuuCUCGUAGu -5'
23568 3' -55.6 NC_005261.1 + 101371 0.73 0.529515
Target:  5'- aGCGUGCG-GGGCGgGcGGAGCG-CGg -3'
miRNA:   3'- gCGCAUGCaCCCGCgCuUCUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 100319 0.73 0.539488
Target:  5'- uCGCGcagcGCGUGGcGCGCGuAGGGCAUg- -3'
miRNA:   3'- -GCGCa---UGCACC-CGCGCuUCUCGUAgu -5'
23568 3' -55.6 NC_005261.1 + 82963 0.73 0.51961
Target:  5'- gGCGgaagACGUGGuGCGCGucGAGCAc-- -3'
miRNA:   3'- gCGCa---UGCACC-CGCGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 129656 0.73 0.529515
Target:  5'- gGCGgcgGCGgcagGGGCGgGAccgGGGGCGUCGc -3'
miRNA:   3'- gCGCa--UGCa---CCCGCgCU---UCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 80053 0.72 0.61072
Target:  5'- uCGCcacugGCGgcGGGCGCGggGGGCGUgGg -3'
miRNA:   3'- -GCGca---UGCa-CCCGCGCuuCUCGUAgU- -5'
23568 3' -55.6 NC_005261.1 + 131221 0.72 0.59018
Target:  5'- cCGCGUACGUGGcCGCGc---GCAUCGa -3'
miRNA:   3'- -GCGCAUGCACCcGCGCuucuCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 73874 0.72 0.621018
Target:  5'- aGCGgguCGUGGGCGUGucccuGAGCuUCGa -3'
miRNA:   3'- gCGCau-GCACCCGCGCuu---CUCGuAGU- -5'
23568 3' -55.6 NC_005261.1 + 82199 0.72 0.621018
Target:  5'- uCGCGcGCGUcacGGGCGCGAuu-GCGUCu -3'
miRNA:   3'- -GCGCaUGCA---CCCGCGCUucuCGUAGu -5'
23568 3' -55.6 NC_005261.1 + 61337 0.72 0.600438
Target:  5'- gCGCG-ACGUGGGCGa--AGAGCGUg- -3'
miRNA:   3'- -GCGCaUGCACCCGCgcuUCUCGUAgu -5'
23568 3' -55.6 NC_005261.1 + 79799 0.72 0.59018
Target:  5'- aCGCGUGCGUGGGCuucucGCGgcGGcuGCAgugCAc -3'
miRNA:   3'- -GCGCAUGCACCCG-----CGCuuCU--CGUa--GU- -5'
23568 3' -55.6 NC_005261.1 + 13761 0.72 0.59018
Target:  5'- gGCauGUACGUGGGCGCcccuGAGGGCAc-- -3'
miRNA:   3'- gCG--CAUGCACCCGCGc---UUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 75045 0.72 0.579953
Target:  5'- uGCGgAgGUGGGCGCGGgcgugucgcGGAGCAcgUCGg -3'
miRNA:   3'- gCGCaUgCACCCGCGCU---------UCUCGU--AGU- -5'
23568 3' -55.6 NC_005261.1 + 82675 0.71 0.641632
Target:  5'- gGCG-ACGUGGGCGUGGgcGGGGCc--- -3'
miRNA:   3'- gCGCaUGCACCCGCGCU--UCUCGuagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.