Results 1 - 20 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 77 | 0.68 | 0.825814 |
Target: 5'- gCGCGgggGCG-GGGUGCGggGcGCGc-- -3' miRNA: 3'- -GCGCa--UGCaCCCGCGCuuCuCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 661 | 0.66 | 0.919191 |
Target: 5'- gCGCGcuuaggugGCG-GGGCGCGAGGcuaggguuGGCAcCAa -3' miRNA: 3'- -GCGCa-------UGCaCCCGCGCUUC--------UCGUaGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 1022 | 0.66 | 0.887722 |
Target: 5'- gGCGg--GUGGGCuuuuGCGGAGGGCGg-- -3' miRNA: 3'- gCGCaugCACCCG----CGCUUCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 1050 | 0.68 | 0.817196 |
Target: 5'- gGCGgcgGCGUuaGcGGCGCGggGGGCu--- -3' miRNA: 3'- gCGCa--UGCA--C-CCGCGCuuCUCGuagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 4455 | 0.67 | 0.842506 |
Target: 5'- uGCGccgcACGaGGGCGUGGaggcacGGGGCGUCGa -3' miRNA: 3'- gCGCa---UGCaCCCGCGCU------UCUCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 5762 | 0.67 | 0.858423 |
Target: 5'- gGCGagGCGcUGccGGCGCGGAGGGCGg-- -3' miRNA: 3'- gCGCa-UGC-AC--CCGCGCUUCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 6629 | 0.67 | 0.84005 |
Target: 5'- gCGCGUACGUGcgcgcgcgcgcguaGGCcucggccgucGCGggGGGCAg-- -3' miRNA: 3'- -GCGCAUGCAC--------------CCG----------CGCuuCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 7205 | 0.67 | 0.850565 |
Target: 5'- gCGCGUGCGU-GGCaGCGguGAGUAg-- -3' miRNA: 3'- -GCGCAUGCAcCCG-CGCuuCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 7557 | 0.67 | 0.866074 |
Target: 5'- aCGCGcGCGggcagGGGCucgcCGAGGAGCAgcgCGu -3' miRNA: 3'- -GCGCaUGCa----CCCGc---GCUUCUCGUa--GU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 8928 | 0.66 | 0.907316 |
Target: 5'- aGCGcagGCGcgGGGCGCcGGGGGCGg-- -3' miRNA: 3'- gCGCa--UGCa-CCCGCGcUUCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 10028 | 0.66 | 0.919191 |
Target: 5'- aGCgGUGCGgGGGCGgGGuuGAGCAa-- -3' miRNA: 3'- gCG-CAUGCaCCCGCgCUu-CUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 11465 | 0.66 | 0.919191 |
Target: 5'- aGCGga-GcGGGCGCGgAGGGGCGgggCGg -3' miRNA: 3'- gCGCaugCaCCCGCGC-UUCUCGUa--GU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 13669 | 0.67 | 0.858423 |
Target: 5'- cCGCGggggggGCGcgGGGCGCGc-GGGCGUgGg -3' miRNA: 3'- -GCGCa-----UGCa-CCCGCGCuuCUCGUAgU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 13761 | 0.72 | 0.59018 |
Target: 5'- gGCauGUACGUGGGCGCcccuGAGGGCAc-- -3' miRNA: 3'- gCG--CAUGCACCCGCGc---UUCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 15030 | 0.66 | 0.894487 |
Target: 5'- gCGgGUGCcggGGGCguaGCGggGGGgGUCGg -3' miRNA: 3'- -GCgCAUGca-CCCG---CGCuuCUCgUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 15530 | 0.66 | 0.901019 |
Target: 5'- gCGCGgcCG-GcGGCGCGGcgauGGAGCAggcgCAg -3' miRNA: 3'- -GCGCauGCaC-CCGCGCU----UCUCGUa---GU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 17173 | 0.71 | 0.651932 |
Target: 5'- gCGCGgGCGUGGGCagcccugccgcgGCGgcGAGCAg-- -3' miRNA: 3'- -GCGCaUGCACCCG------------CGCuuCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 18184 | 0.66 | 0.894487 |
Target: 5'- aGCGcaggcGCGUGGaGCGCGgcGGGUAg-- -3' miRNA: 3'- gCGCa----UGCACC-CGCGCuuCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 18728 | 0.67 | 0.863801 |
Target: 5'- cCGCGUGCuGUuggcGGGCgGCGGcgccggcguccccaAGGGCGUCu -3' miRNA: 3'- -GCGCAUG-CA----CCCG-CGCU--------------UCUCGUAGu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 19027 | 0.66 | 0.887722 |
Target: 5'- aGCGUcGCG-GGGCaGcCGGAGAGCcgCc -3' miRNA: 3'- gCGCA-UGCaCCCG-C-GCUUCUCGuaGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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