miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 3' -55.6 NC_005261.1 + 77 0.68 0.825814
Target:  5'- gCGCGgggGCG-GGGUGCGggGcGCGc-- -3'
miRNA:   3'- -GCGCa--UGCaCCCGCGCuuCuCGUagu -5'
23568 3' -55.6 NC_005261.1 + 661 0.66 0.919191
Target:  5'- gCGCGcuuaggugGCG-GGGCGCGAGGcuaggguuGGCAcCAa -3'
miRNA:   3'- -GCGCa-------UGCaCCCGCGCUUC--------UCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 1022 0.66 0.887722
Target:  5'- gGCGg--GUGGGCuuuuGCGGAGGGCGg-- -3'
miRNA:   3'- gCGCaugCACCCG----CGCUUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 1050 0.68 0.817196
Target:  5'- gGCGgcgGCGUuaGcGGCGCGggGGGCu--- -3'
miRNA:   3'- gCGCa--UGCA--C-CCGCGCuuCUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 4455 0.67 0.842506
Target:  5'- uGCGccgcACGaGGGCGUGGaggcacGGGGCGUCGa -3'
miRNA:   3'- gCGCa---UGCaCCCGCGCU------UCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 5762 0.67 0.858423
Target:  5'- gGCGagGCGcUGccGGCGCGGAGGGCGg-- -3'
miRNA:   3'- gCGCa-UGC-AC--CCGCGCUUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 6629 0.67 0.84005
Target:  5'- gCGCGUACGUGcgcgcgcgcgcguaGGCcucggccgucGCGggGGGCAg-- -3'
miRNA:   3'- -GCGCAUGCAC--------------CCG----------CGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 7205 0.67 0.850565
Target:  5'- gCGCGUGCGU-GGCaGCGguGAGUAg-- -3'
miRNA:   3'- -GCGCAUGCAcCCG-CGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 7557 0.67 0.866074
Target:  5'- aCGCGcGCGggcagGGGCucgcCGAGGAGCAgcgCGu -3'
miRNA:   3'- -GCGCaUGCa----CCCGc---GCUUCUCGUa--GU- -5'
23568 3' -55.6 NC_005261.1 + 8928 0.66 0.907316
Target:  5'- aGCGcagGCGcgGGGCGCcGGGGGCGg-- -3'
miRNA:   3'- gCGCa--UGCa-CCCGCGcUUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 10028 0.66 0.919191
Target:  5'- aGCgGUGCGgGGGCGgGGuuGAGCAa-- -3'
miRNA:   3'- gCG-CAUGCaCCCGCgCUu-CUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 11465 0.66 0.919191
Target:  5'- aGCGga-GcGGGCGCGgAGGGGCGgggCGg -3'
miRNA:   3'- gCGCaugCaCCCGCGC-UUCUCGUa--GU- -5'
23568 3' -55.6 NC_005261.1 + 13669 0.67 0.858423
Target:  5'- cCGCGggggggGCGcgGGGCGCGc-GGGCGUgGg -3'
miRNA:   3'- -GCGCa-----UGCa-CCCGCGCuuCUCGUAgU- -5'
23568 3' -55.6 NC_005261.1 + 13761 0.72 0.59018
Target:  5'- gGCauGUACGUGGGCGCcccuGAGGGCAc-- -3'
miRNA:   3'- gCG--CAUGCACCCGCGc---UUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 15030 0.66 0.894487
Target:  5'- gCGgGUGCcggGGGCguaGCGggGGGgGUCGg -3'
miRNA:   3'- -GCgCAUGca-CCCG---CGCuuCUCgUAGU- -5'
23568 3' -55.6 NC_005261.1 + 15530 0.66 0.901019
Target:  5'- gCGCGgcCG-GcGGCGCGGcgauGGAGCAggcgCAg -3'
miRNA:   3'- -GCGCauGCaC-CCGCGCU----UCUCGUa---GU- -5'
23568 3' -55.6 NC_005261.1 + 17173 0.71 0.651932
Target:  5'- gCGCGgGCGUGGGCagcccugccgcgGCGgcGAGCAg-- -3'
miRNA:   3'- -GCGCaUGCACCCG------------CGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 18184 0.66 0.894487
Target:  5'- aGCGcaggcGCGUGGaGCGCGgcGGGUAg-- -3'
miRNA:   3'- gCGCa----UGCACC-CGCGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 18728 0.67 0.863801
Target:  5'- cCGCGUGCuGUuggcGGGCgGCGGcgccggcguccccaAGGGCGUCu -3'
miRNA:   3'- -GCGCAUG-CA----CCCG-CGCU--------------UCUCGUAGu -5'
23568 3' -55.6 NC_005261.1 + 19027 0.66 0.887722
Target:  5'- aGCGUcGCG-GGGCaGcCGGAGAGCcgCc -3'
miRNA:   3'- gCGCA-UGCaCCCG-C-GCUUCUCGuaGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.