miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 3' -55.6 NC_005261.1 + 21285 0.67 0.866074
Target:  5'- cCGCGUcuUGUuGGCGCGGAaGGCGUCc -3'
miRNA:   3'- -GCGCAu-GCAcCCGCGCUUcUCGUAGu -5'
23568 3' -55.6 NC_005261.1 + 21696 0.66 0.913373
Target:  5'- aCGC--GCGcGGGCGCGGAGcGGCGg-- -3'
miRNA:   3'- -GCGcaUGCaCCCGCGCUUC-UCGUagu -5'
23568 3' -55.6 NC_005261.1 + 22089 0.7 0.703016
Target:  5'- gGCGccGCGUGGGgGCGgGAGGGCGg-- -3'
miRNA:   3'- gCGCa-UGCACCCgCGC-UUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 25279 0.67 0.873511
Target:  5'- cCGCG-AgG-GGGCGCGGucuguggccguGAGCGUCGu -3'
miRNA:   3'- -GCGCaUgCaCCCGCGCUu----------CUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 25625 0.66 0.919191
Target:  5'- uGCGagGCGcGGuCGuCGAAGAGCGUCc -3'
miRNA:   3'- gCGCa-UGCaCCcGC-GCUUCUCGUAGu -5'
23568 3' -55.6 NC_005261.1 + 28113 0.67 0.866074
Target:  5'- uGCGUcaGCGUcaggacGGGCGCGccGGGGCGcUCGa -3'
miRNA:   3'- gCGCA--UGCA------CCCGCGCu-UCUCGU-AGU- -5'
23568 3' -55.6 NC_005261.1 + 29301 0.78 0.284335
Target:  5'- gGCGUGCGUGGGCGUGcuGGGCccCGa -3'
miRNA:   3'- gCGCAUGCACCCGCGCuuCUCGuaGU- -5'
23568 3' -55.6 NC_005261.1 + 29337 0.66 0.907316
Target:  5'- cCGCGUGCGcuucgGcGGCGCGGgcgacacucgcgAGGGCcUCu -3'
miRNA:   3'- -GCGCAUGCa----C-CCGCGCU------------UCUCGuAGu -5'
23568 3' -55.6 NC_005261.1 + 29726 0.7 0.713088
Target:  5'- uGCGcgGCGUGGcCGCGGGuAGCGUCGc -3'
miRNA:   3'- gCGCa-UGCACCcGCGCUUcUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 30756 0.67 0.850565
Target:  5'- cCGCugaucGCGUGGGCGCGGgacugcggugccGGGGCGg-- -3'
miRNA:   3'- -GCGca---UGCACCCGCGCU------------UCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 31581 0.66 0.901019
Target:  5'- gCGCGccggACGUGagcgcgcucGGCGCGcAGGGCGUg- -3'
miRNA:   3'- -GCGCa---UGCAC---------CCGCGCuUCUCGUAgu -5'
23568 3' -55.6 NC_005261.1 + 32260 0.66 0.912778
Target:  5'- gGCGUcgacgccGCGcUGGGCGCcGAGGcCAUCGa -3'
miRNA:   3'- gCGCA-------UGC-ACCCGCGcUUCUcGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 32311 0.75 0.452599
Target:  5'- gGCGcgGCGUGGGCGCGcgcGAGCGg-- -3'
miRNA:   3'- gCGCa-UGCACCCGCGCuu-CUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 32914 0.67 0.880729
Target:  5'- gGCGcGCGUgGGGgGCGgcGGGCGg-- -3'
miRNA:   3'- gCGCaUGCA-CCCgCGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 33379 0.66 0.913373
Target:  5'- aCGCGUGCGUGacccGCGCGGuccGCGUg- -3'
miRNA:   3'- -GCGCAUGCACc---CGCGCUucuCGUAgu -5'
23568 3' -55.6 NC_005261.1 + 37048 0.68 0.817196
Target:  5'- gGCGgcgGCGUGggacGGCGCGuGGGAGCucuUCGc -3'
miRNA:   3'- gCGCa--UGCAC----CCGCGC-UUCUCGu--AGU- -5'
23568 3' -55.6 NC_005261.1 + 37161 0.68 0.799456
Target:  5'- cCGCGgGCGUGGugcuggggcugcGCGCGGAcGAGCAc-- -3'
miRNA:   3'- -GCGCaUGCACC------------CGCGCUU-CUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 37240 0.71 0.682701
Target:  5'- gCGCGgcGCGUGGacaGCGCGGAGAcCAUCc -3'
miRNA:   3'- -GCGCa-UGCACC---CGCGCUUCUcGUAGu -5'
23568 3' -55.6 NC_005261.1 + 39997 0.66 0.901019
Target:  5'- gGCGUGCGUGaaGGCGUac-GAGCAg-- -3'
miRNA:   3'- gCGCAUGCAC--CCGCGcuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 41893 0.66 0.897128
Target:  5'- gGCGUcAgGUGcGCGCGGccgcgcaggccagucAGGGCGUCAg -3'
miRNA:   3'- gCGCA-UgCACcCGCGCU---------------UCUCGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.