miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 3' -55.6 NC_005261.1 + 37048 0.68 0.817196
Target:  5'- gGCGgcgGCGUGggacGGCGCGuGGGAGCucuUCGc -3'
miRNA:   3'- gCGCa--UGCAC----CCGCGC-UUCUCGu--AGU- -5'
23568 3' -55.6 NC_005261.1 + 29301 0.78 0.284335
Target:  5'- gGCGUGCGUGGGCGUGcuGGGCccCGa -3'
miRNA:   3'- gCGCAUGCACCCGCGCuuCUCGuaGU- -5'
23568 3' -55.6 NC_005261.1 + 87034 0.75 0.461893
Target:  5'- gCGCGccCGgGGGCGUGgcGAGCGUCGc -3'
miRNA:   3'- -GCGCauGCaCCCGCGCuuCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 101371 0.73 0.529515
Target:  5'- aGCGUGCG-GGGCGgGcGGAGCG-CGg -3'
miRNA:   3'- gCGCAUGCaCCCGCgCuUCUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 100319 0.73 0.539488
Target:  5'- uCGCGcagcGCGUGGcGCGCGuAGGGCAUg- -3'
miRNA:   3'- -GCGCa---UGCACC-CGCGCuUCUCGUAgu -5'
23568 3' -55.6 NC_005261.1 + 75045 0.72 0.579953
Target:  5'- uGCGgAgGUGGGCGCGGgcgugucgcGGAGCAcgUCGg -3'
miRNA:   3'- gCGCaUgCACCCGCGCU---------UCUCGU--AGU- -5'
23568 3' -55.6 NC_005261.1 + 13761 0.72 0.59018
Target:  5'- gGCauGUACGUGGGCGCcccuGAGGGCAc-- -3'
miRNA:   3'- gCG--CAUGCACCCGCGc---UUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 79799 0.72 0.59018
Target:  5'- aCGCGUGCGUGGGCuucucGCGgcGGcuGCAgugCAc -3'
miRNA:   3'- -GCGCAUGCACCCG-----CGCuuCU--CGUa--GU- -5'
23568 3' -55.6 NC_005261.1 + 61337 0.72 0.600438
Target:  5'- gCGCG-ACGUGGGCGa--AGAGCGUg- -3'
miRNA:   3'- -GCGCaUGCACCCGCgcuUCUCGUAgu -5'
23568 3' -55.6 NC_005261.1 + 82199 0.72 0.621018
Target:  5'- uCGCGcGCGUcacGGGCGCGAuu-GCGUCu -3'
miRNA:   3'- -GCGCaUGCA---CCCGCGCUucuCGUAGu -5'
23568 3' -55.6 NC_005261.1 + 82675 0.71 0.641632
Target:  5'- gGCG-ACGUGGGCGUGGgcGGGGCc--- -3'
miRNA:   3'- gCGCaUGCACCCGCGCU--UCUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 79311 0.7 0.703016
Target:  5'- gGCGUGCGcGGGCGCGcuGGuGCGc-- -3'
miRNA:   3'- gCGCAUGCaCCCGCGCu-UCuCGUagu -5'
23568 3' -55.6 NC_005261.1 + 87501 0.7 0.703016
Target:  5'- gCGCGUGCGgcgacgaGGGCGaGGAGGcGCGUUAu -3'
miRNA:   3'- -GCGCAUGCa------CCCGCgCUUCU-CGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 126607 0.7 0.703016
Target:  5'- gGCGccGCGUGGGgGCGgGAGGGCGg-- -3'
miRNA:   3'- gCGCa-UGCACCCgCGC-UUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 29726 0.7 0.713088
Target:  5'- uGCGcgGCGUGGcCGCGGGuAGCGUCGc -3'
miRNA:   3'- gCGCa-UGCACCcGCGCUUcUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 51543 0.68 0.799456
Target:  5'- gCGCGUACGUGGGcCGCcucgccgggcuGguGGGCGcCAu -3'
miRNA:   3'- -GCGCAUGCACCC-GCG-----------CuuCUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 37161 0.68 0.799456
Target:  5'- cCGCGgGCGUGGugcuggggcugcGCGCGGAcGAGCAc-- -3'
miRNA:   3'- -GCGCaUGCACC------------CGCGCUU-CUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 53566 0.68 0.808407
Target:  5'- gCGCGgcCGcGGGCGCGGGcGGCGcCAg -3'
miRNA:   3'- -GCGCauGCaCCCGCGCUUcUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 94565 0.68 0.817196
Target:  5'- cCGC-UGCaUGGGCGacuCGAAGAGCAcgUCAc -3'
miRNA:   3'- -GCGcAUGcACCCGC---GCUUCUCGU--AGU- -5'
23568 3' -55.6 NC_005261.1 + 105568 0.68 0.817196
Target:  5'- gGCGgcgGCGUuaGcGGCGCGggGGGCu--- -3'
miRNA:   3'- gCGCa--UGCA--C-CCGCGCuuCUCGuagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.