miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 3' -55.6 NC_005261.1 + 25279 0.67 0.873511
Target:  5'- cCGCG-AgG-GGGCGCGGucuguggccguGAGCGUCGu -3'
miRNA:   3'- -GCGCaUgCaCCCGCGCUu----------CUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 32914 0.67 0.880729
Target:  5'- gGCGcGCGUgGGGgGCGgcGGGCGg-- -3'
miRNA:   3'- gCGCaUGCA-CCCgCGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 15030 0.66 0.894487
Target:  5'- gCGgGUGCcggGGGCguaGCGggGGGgGUCGg -3'
miRNA:   3'- -GCgCAUGca-CCCG---CGCuuCUCgUAGU- -5'
23568 3' -55.6 NC_005261.1 + 112671 0.66 0.913373
Target:  5'- aGCG-GC-UGGaGCGCGAGGGGCugggcGUCGa -3'
miRNA:   3'- gCGCaUGcACC-CGCGCUUCUCG-----UAGU- -5'
23568 3' -55.6 NC_005261.1 + 1050 0.68 0.817196
Target:  5'- gGCGgcgGCGUuaGcGGCGCGggGGGCu--- -3'
miRNA:   3'- gCGCa--UGCA--C-CCGCGCuuCUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 7205 0.67 0.850565
Target:  5'- gCGCGUGCGU-GGCaGCGguGAGUAg-- -3'
miRNA:   3'- -GCGCAUGCAcCCG-CGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 108182 0.67 0.880729
Target:  5'- gCGCGgccGCGgcuccGGGCGCG-AGAGCu--- -3'
miRNA:   3'- -GCGCa--UGCa----CCCGCGCuUCUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 11465 0.66 0.919191
Target:  5'- aGCGga-GcGGGCGCGgAGGGGCGgggCGg -3'
miRNA:   3'- gCGCaugCaCCCGCGC-UUCUCGUa--GU- -5'
23568 3' -55.6 NC_005261.1 + 13669 0.67 0.858423
Target:  5'- cCGCGggggggGCGcgGGGCGCGc-GGGCGUgGg -3'
miRNA:   3'- -GCGCa-----UGCa-CCCGCGCuuCUCGUAgU- -5'
23568 3' -55.6 NC_005261.1 + 97751 0.66 0.919191
Target:  5'- gGCGggGCGggcucgGcGGCGCGGccGGCAUCGa -3'
miRNA:   3'- gCGCa-UGCa-----C-CCGCGCUucUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 86094 0.67 0.880729
Target:  5'- gCGCGUucuCGUcGGCGCcc-GGGCGUCGg -3'
miRNA:   3'- -GCGCAu--GCAcCCGCGcuuCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 74481 0.67 0.871302
Target:  5'- gGCGUGCcUGGGCGgGAucucggcgcucuucGGGGCggCGc -3'
miRNA:   3'- gCGCAUGcACCCGCgCU--------------UCUCGuaGU- -5'
23568 3' -55.6 NC_005261.1 + 63567 0.66 0.887722
Target:  5'- gCGCGgcCGgcaugaUGGGCcCGAAGAGCGgcgCGg -3'
miRNA:   3'- -GCGCauGC------ACCCGcGCUUCUCGUa--GU- -5'
23568 3' -55.6 NC_005261.1 + 87620 0.66 0.890456
Target:  5'- cCGCG-ACGuUGGGCGCGAAcgccgccuccacgguGAGCccgCGc -3'
miRNA:   3'- -GCGCaUGC-ACCCGCGCUU---------------CUCGua-GU- -5'
23568 3' -55.6 NC_005261.1 + 67665 0.66 0.894487
Target:  5'- cCGCGcGCGgcgccaGGCGCGguGAGCgcGUCAa -3'
miRNA:   3'- -GCGCaUGCac----CCGCGCuuCUCG--UAGU- -5'
23568 3' -55.6 NC_005261.1 + 29337 0.66 0.907316
Target:  5'- cCGCGUGCGcuucgGcGGCGCGGgcgacacucgcgAGGGCcUCu -3'
miRNA:   3'- -GCGCAUGCa----C-CCGCGCU------------UCUCGuAGu -5'
23568 3' -55.6 NC_005261.1 + 111601 0.69 0.781103
Target:  5'- aCGCGga-GUGGGCGCGGcuGGGCu--- -3'
miRNA:   3'- -GCGCaugCACCCGCGCUu-CUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 126940 0.68 0.817196
Target:  5'- gCGCGgccagggGCGccGGGCGCGggG-GCggCAg -3'
miRNA:   3'- -GCGCa------UGCa-CCCGCGCuuCuCGuaGU- -5'
23568 3' -55.6 NC_005261.1 + 137760 0.68 0.825814
Target:  5'- gCGCGgggGCG-GGGUGCGggGcGCGc-- -3'
miRNA:   3'- -GCGCa--UGCaCCCGCGCuuCuCGUagu -5'
23568 3' -55.6 NC_005261.1 + 81350 0.67 0.842506
Target:  5'- gGCGggGCGgGGGCuuGCGggGGGCGcCGg -3'
miRNA:   3'- gCGCa-UGCaCCCG--CGCuuCUCGUaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.