Results 41 - 60 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 75045 | 0.72 | 0.579953 |
Target: 5'- uGCGgAgGUGGGCGCGGgcgugucgcGGAGCAcgUCGg -3' miRNA: 3'- gCGCaUgCACCCGCGCU---------UCUCGU--AGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 100319 | 0.73 | 0.539488 |
Target: 5'- uCGCGcagcGCGUGGcGCGCGuAGGGCAUg- -3' miRNA: 3'- -GCGCa---UGCACC-CGCGCuUCUCGUAgu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 101371 | 0.73 | 0.529515 |
Target: 5'- aGCGUGCG-GGGCGgGcGGAGCG-CGg -3' miRNA: 3'- gCGCAUGCaCCCGCgCuUCUCGUaGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 87034 | 0.75 | 0.461893 |
Target: 5'- gCGCGccCGgGGGCGUGgcGAGCGUCGc -3' miRNA: 3'- -GCGCauGCaCCCGCGCuuCUCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 32311 | 0.75 | 0.452599 |
Target: 5'- gGCGcgGCGUGGGCGCGcgcGAGCGg-- -3' miRNA: 3'- gCGCa-UGCACCCGCGCuu-CUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 29726 | 0.7 | 0.713088 |
Target: 5'- uGCGcgGCGUGGcCGCGGGuAGCGUCGc -3' miRNA: 3'- gCGCa-UGCACCcGCGCUUcUCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 51543 | 0.68 | 0.799456 |
Target: 5'- gCGCGUACGUGGGcCGCcucgccgggcuGguGGGCGcCAu -3' miRNA: 3'- -GCGCAUGCACCC-GCG-----------CuuCUCGUaGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 81630 | 0.67 | 0.849768 |
Target: 5'- gCGCGcGCGcuUGGcGCGCGggGGGUccgcgccGUCGu -3' miRNA: 3'- -GCGCaUGC--ACC-CGCGCuuCUCG-------UAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 95726 | 0.67 | 0.842506 |
Target: 5'- uGCGUGaucacGGGCGCGAcGcGCGUCGc -3' miRNA: 3'- gCGCAUgca--CCCGCGCUuCuCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 4455 | 0.67 | 0.842506 |
Target: 5'- uGCGccgcACGaGGGCGUGGaggcacGGGGCGUCGa -3' miRNA: 3'- gCGCa---UGCaCCCGCGCU------UCUCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 43635 | 0.67 | 0.842506 |
Target: 5'- gCGCGcgcuCGUGGGCG-GAGGGcGCGUUc -3' miRNA: 3'- -GCGCau--GCACCCGCgCUUCU-CGUAGu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 6629 | 0.67 | 0.84005 |
Target: 5'- gCGCGUACGUGcgcgcgcgcgcguaGGCcucggccgucGCGggGGGCAg-- -3' miRNA: 3'- -GCGCAUGCAC--------------CCG----------CGCuuCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 83195 | 0.68 | 0.834253 |
Target: 5'- cCGCGcagcUGCGcgGGGCcgGCGGcuacgGGAGCGUCGu -3' miRNA: 3'- -GCGC----AUGCa-CCCG--CGCU-----UCUCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 104595 | 0.68 | 0.825814 |
Target: 5'- gCGCGgggGCG-GGGUGCGggGcGCGc-- -3' miRNA: 3'- -GCGCa--UGCaCCCGCGCuuCuCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 52124 | 0.68 | 0.825814 |
Target: 5'- gCGCGcuccgACGcccGGGCGcCGAcgagaacgcgcGGAGCAUCAu -3' miRNA: 3'- -GCGCa----UGCa--CCCGC-GCU-----------UCUCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 105568 | 0.68 | 0.817196 |
Target: 5'- gGCGgcgGCGUuaGcGGCGCGggGGGCu--- -3' miRNA: 3'- gCGCa--UGCA--C-CCGCGCuuCUCGuagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 37048 | 0.68 | 0.817196 |
Target: 5'- gGCGgcgGCGUGggacGGCGCGuGGGAGCucuUCGc -3' miRNA: 3'- gCGCa--UGCAC----CCGCGC-UUCUCGu--AGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 94565 | 0.68 | 0.817196 |
Target: 5'- cCGC-UGCaUGGGCGacuCGAAGAGCAcgUCAc -3' miRNA: 3'- -GCGcAUGcACCCGC---GCUUCUCGU--AGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 53566 | 0.68 | 0.808407 |
Target: 5'- gCGCGgcCGcGGGCGCGGGcGGCGcCAg -3' miRNA: 3'- -GCGCauGCaCCCGCGCUUcUCGUaGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 37161 | 0.68 | 0.799456 |
Target: 5'- cCGCGgGCGUGGugcuggggcugcGCGCGGAcGAGCAc-- -3' miRNA: 3'- -GCGCaUGCACC------------CGCGCUU-CUCGUagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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