miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 3' -55.6 NC_005261.1 + 37161 0.68 0.799456
Target:  5'- cCGCGgGCGUGGugcuggggcugcGCGCGGAcGAGCAc-- -3'
miRNA:   3'- -GCGCaUGCACC------------CGCGCUU-CUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 53566 0.68 0.808407
Target:  5'- gCGCGgcCGcGGGCGCGGGcGGCGcCAg -3'
miRNA:   3'- -GCGCauGCaCCCGCGCUUcUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 1050 0.68 0.817196
Target:  5'- gGCGgcgGCGUuaGcGGCGCGggGGGCu--- -3'
miRNA:   3'- gCGCa--UGCA--C-CCGCGCuuCUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 126940 0.68 0.817196
Target:  5'- gCGCGgccagggGCGccGGGCGCGggG-GCggCAg -3'
miRNA:   3'- -GCGCa------UGCa-CCCGCGCuuCuCGuaGU- -5'
23568 3' -55.6 NC_005261.1 + 94565 0.68 0.817196
Target:  5'- cCGC-UGCaUGGGCGacuCGAAGAGCAcgUCAc -3'
miRNA:   3'- -GCGcAUGcACCCGC---GCUUCUCGU--AGU- -5'
23568 3' -55.6 NC_005261.1 + 37048 0.68 0.817196
Target:  5'- gGCGgcgGCGUGggacGGCGCGuGGGAGCucuUCGc -3'
miRNA:   3'- gCGCa--UGCAC----CCGCGC-UUCUCGu--AGU- -5'
23568 3' -55.6 NC_005261.1 + 105568 0.68 0.817196
Target:  5'- gGCGgcgGCGUuaGcGGCGCGggGGGCu--- -3'
miRNA:   3'- gCGCa--UGCA--C-CCGCGCuuCUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 132666 0.68 0.823247
Target:  5'- cCGCGU--GUGGGUGCGAGGAcaagaugggcuuccGCGUg- -3'
miRNA:   3'- -GCGCAugCACCCGCGCUUCU--------------CGUAgu -5'
23568 3' -55.6 NC_005261.1 + 77 0.68 0.825814
Target:  5'- gCGCGgggGCG-GGGUGCGggGcGCGc-- -3'
miRNA:   3'- -GCGCa--UGCaCCCGCGCuuCuCGUagu -5'
23568 3' -55.6 NC_005261.1 + 52124 0.68 0.825814
Target:  5'- gCGCGcuccgACGcccGGGCGcCGAcgagaacgcgcGGAGCAUCAu -3'
miRNA:   3'- -GCGCa----UGCa--CCCGC-GCU-----------UCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 104595 0.68 0.825814
Target:  5'- gCGCGgggGCG-GGGUGCGggGcGCGc-- -3'
miRNA:   3'- -GCGCa--UGCaCCCGCGCuuCuCGUagu -5'
23568 3' -55.6 NC_005261.1 + 89111 0.68 0.825814
Target:  5'- gCGCGcGCGUGGcacuGCGCGcgccGGAGCAgCAc -3'
miRNA:   3'- -GCGCaUGCACC----CGCGCu---UCUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 137760 0.68 0.825814
Target:  5'- gCGCGgggGCG-GGGUGCGggGcGCGc-- -3'
miRNA:   3'- -GCGCa--UGCaCCCGCGCuuCuCGUagu -5'
23568 3' -55.6 NC_005261.1 + 83195 0.68 0.834253
Target:  5'- cCGCGcagcUGCGcgGGGCcgGCGGcuacgGGAGCGUCGu -3'
miRNA:   3'- -GCGC----AUGCa-CCCG--CGCU-----UCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 67055 0.68 0.834253
Target:  5'- cCGUGUAgGcGGGCGCGcgcGGGGGC-UCGc -3'
miRNA:   3'- -GCGCAUgCaCCCGCGC---UUCUCGuAGU- -5'
23568 3' -55.6 NC_005261.1 + 6629 0.67 0.84005
Target:  5'- gCGCGUACGUGcgcgcgcgcgcguaGGCcucggccgucGCGggGGGCAg-- -3'
miRNA:   3'- -GCGCAUGCAC--------------CCG----------CGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 81350 0.67 0.842506
Target:  5'- gGCGggGCGgGGGCuuGCGggGGGCGcCGg -3'
miRNA:   3'- gCGCa-UGCaCCCG--CGCuuCUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 43635 0.67 0.842506
Target:  5'- gCGCGcgcuCGUGGGCG-GAGGGcGCGUUc -3'
miRNA:   3'- -GCGCau--GCACCCGCgCUUCU-CGUAGu -5'
23568 3' -55.6 NC_005261.1 + 4455 0.67 0.842506
Target:  5'- uGCGccgcACGaGGGCGUGGaggcacGGGGCGUCGa -3'
miRNA:   3'- gCGCa---UGCaCCCGCGCU------UCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 95726 0.67 0.842506
Target:  5'- uGCGUGaucacGGGCGCGAcGcGCGUCGc -3'
miRNA:   3'- gCGCAUgca--CCCGCGCUuCuCGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.