Results 41 - 60 of 128 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 43635 | 0.67 | 0.842506 |
Target: 5'- gCGCGcgcuCGUGGGCG-GAGGGcGCGUUc -3' miRNA: 3'- -GCGCau--GCACCCGCgCUUCU-CGUAGu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 45653 | 0.67 | 0.880729 |
Target: 5'- uGCGcucgcGCGUGGGCGCGcGGcGCG-CGg -3' miRNA: 3'- gCGCa----UGCACCCGCGCuUCuCGUaGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 46031 | 0.66 | 0.887722 |
Target: 5'- aGCaggACGgGGGCGCGGuAGAGgGUCc -3' miRNA: 3'- gCGca-UGCaCCCGCGCU-UCUCgUAGu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 48795 | 0.66 | 0.907316 |
Target: 5'- aGC--ACGgcGGGCGCGggGAGCc--- -3' miRNA: 3'- gCGcaUGCa-CCCGCGCuuCUCGuagu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 49449 | 0.67 | 0.873511 |
Target: 5'- gCGCGgcgccgGCGgccaGGGC-CGAGGAGCG-CAg -3' miRNA: 3'- -GCGCa-----UGCa---CCCGcGCUUCUCGUaGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 50997 | 0.79 | 0.271167 |
Target: 5'- gGCGgcGCGUGGGCGCGGcgGGAGC-UCGg -3' miRNA: 3'- gCGCa-UGCACCCGCGCU--UCUCGuAGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 51543 | 0.68 | 0.799456 |
Target: 5'- gCGCGUACGUGGGcCGCcucgccgggcuGguGGGCGcCAu -3' miRNA: 3'- -GCGCAUGCACCC-GCG-----------CuuCUCGUaGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 52124 | 0.68 | 0.825814 |
Target: 5'- gCGCGcuccgACGcccGGGCGcCGAcgagaacgcgcGGAGCAUCAu -3' miRNA: 3'- -GCGCa----UGCa--CCCGC-GCU-----------UCUCGUAGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 53566 | 0.68 | 0.808407 |
Target: 5'- gCGCGgcCGcGGGCGCGGGcGGCGcCAg -3' miRNA: 3'- -GCGCauGCaCCCGCGCUUcUCGUaGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 55281 | 0.7 | 0.733012 |
Target: 5'- gCGCGccggagGCGgGGGCGCuGAAGAGCcggugcgggggGUCAg -3' miRNA: 3'- -GCGCa-----UGCaCCCGCG-CUUCUCG-----------UAGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 55684 | 0.66 | 0.907316 |
Target: 5'- gCGCGgcCGcGGGCGaggaGggGGGCGa-- -3' miRNA: 3'- -GCGCauGCaCCCGCg---CuuCUCGUagu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 56403 | 0.67 | 0.880729 |
Target: 5'- uCGCauccGCGcGGGCGCG--GGGCGUCAc -3' miRNA: 3'- -GCGca--UGCaCCCGCGCuuCUCGUAGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 58294 | 0.67 | 0.866074 |
Target: 5'- gCGCGc-CGggGGGCGCGggGAGgGg-- -3' miRNA: 3'- -GCGCauGCa-CCCGCGCuuCUCgUagu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 58456 | 0.76 | 0.390582 |
Target: 5'- aCGCGUACGacucgccGGGCGCGuauGAGCcgCAg -3' miRNA: 3'- -GCGCAUGCa------CCCGCGCuu-CUCGuaGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 58698 | 0.67 | 0.850565 |
Target: 5'- aCGCGUACGUGcGGCGgGucccgcucgcGGAGCu--- -3' miRNA: 3'- -GCGCAUGCAC-CCGCgCu---------UCUCGuagu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 59059 | 0.66 | 0.894487 |
Target: 5'- aGCGcGCGcGGcCGCGGAGAGCGc-- -3' miRNA: 3'- gCGCaUGCaCCcGCGCUUCUCGUagu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 61337 | 0.72 | 0.600438 |
Target: 5'- gCGCG-ACGUGGGCGa--AGAGCGUg- -3' miRNA: 3'- -GCGCaUGCACCCGCgcuUCUCGUAgu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 63567 | 0.66 | 0.887722 |
Target: 5'- gCGCGgcCGgcaugaUGGGCcCGAAGAGCGgcgCGg -3' miRNA: 3'- -GCGCauGC------ACCCGcGCUUCUCGUa--GU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 65169 | 0.66 | 0.894487 |
Target: 5'- gGCGaacACGUGcgccuuccuaGGCGCGggGGGCGc-- -3' miRNA: 3'- gCGCa--UGCAC----------CCGCGCuuCUCGUagu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 67055 | 0.68 | 0.834253 |
Target: 5'- cCGUGUAgGcGGGCGCGcgcGGGGGC-UCGc -3' miRNA: 3'- -GCGCAUgCaCCCGCGC---UUCUCGuAGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home