miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 3' -55.6 NC_005261.1 + 43635 0.67 0.842506
Target:  5'- gCGCGcgcuCGUGGGCG-GAGGGcGCGUUc -3'
miRNA:   3'- -GCGCau--GCACCCGCgCUUCU-CGUAGu -5'
23568 3' -55.6 NC_005261.1 + 45653 0.67 0.880729
Target:  5'- uGCGcucgcGCGUGGGCGCGcGGcGCG-CGg -3'
miRNA:   3'- gCGCa----UGCACCCGCGCuUCuCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 46031 0.66 0.887722
Target:  5'- aGCaggACGgGGGCGCGGuAGAGgGUCc -3'
miRNA:   3'- gCGca-UGCaCCCGCGCU-UCUCgUAGu -5'
23568 3' -55.6 NC_005261.1 + 48795 0.66 0.907316
Target:  5'- aGC--ACGgcGGGCGCGggGAGCc--- -3'
miRNA:   3'- gCGcaUGCa-CCCGCGCuuCUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 49449 0.67 0.873511
Target:  5'- gCGCGgcgccgGCGgccaGGGC-CGAGGAGCG-CAg -3'
miRNA:   3'- -GCGCa-----UGCa---CCCGcGCUUCUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 50997 0.79 0.271167
Target:  5'- gGCGgcGCGUGGGCGCGGcgGGAGC-UCGg -3'
miRNA:   3'- gCGCa-UGCACCCGCGCU--UCUCGuAGU- -5'
23568 3' -55.6 NC_005261.1 + 51543 0.68 0.799456
Target:  5'- gCGCGUACGUGGGcCGCcucgccgggcuGguGGGCGcCAu -3'
miRNA:   3'- -GCGCAUGCACCC-GCG-----------CuuCUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 52124 0.68 0.825814
Target:  5'- gCGCGcuccgACGcccGGGCGcCGAcgagaacgcgcGGAGCAUCAu -3'
miRNA:   3'- -GCGCa----UGCa--CCCGC-GCU-----------UCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 53566 0.68 0.808407
Target:  5'- gCGCGgcCGcGGGCGCGGGcGGCGcCAg -3'
miRNA:   3'- -GCGCauGCaCCCGCGCUUcUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 55281 0.7 0.733012
Target:  5'- gCGCGccggagGCGgGGGCGCuGAAGAGCcggugcgggggGUCAg -3'
miRNA:   3'- -GCGCa-----UGCaCCCGCG-CUUCUCG-----------UAGU- -5'
23568 3' -55.6 NC_005261.1 + 55684 0.66 0.907316
Target:  5'- gCGCGgcCGcGGGCGaggaGggGGGCGa-- -3'
miRNA:   3'- -GCGCauGCaCCCGCg---CuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 56403 0.67 0.880729
Target:  5'- uCGCauccGCGcGGGCGCG--GGGCGUCAc -3'
miRNA:   3'- -GCGca--UGCaCCCGCGCuuCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 58294 0.67 0.866074
Target:  5'- gCGCGc-CGggGGGCGCGggGAGgGg-- -3'
miRNA:   3'- -GCGCauGCa-CCCGCGCuuCUCgUagu -5'
23568 3' -55.6 NC_005261.1 + 58456 0.76 0.390582
Target:  5'- aCGCGUACGacucgccGGGCGCGuauGAGCcgCAg -3'
miRNA:   3'- -GCGCAUGCa------CCCGCGCuu-CUCGuaGU- -5'
23568 3' -55.6 NC_005261.1 + 58698 0.67 0.850565
Target:  5'- aCGCGUACGUGcGGCGgGucccgcucgcGGAGCu--- -3'
miRNA:   3'- -GCGCAUGCAC-CCGCgCu---------UCUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 59059 0.66 0.894487
Target:  5'- aGCGcGCGcGGcCGCGGAGAGCGc-- -3'
miRNA:   3'- gCGCaUGCaCCcGCGCUUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 61337 0.72 0.600438
Target:  5'- gCGCG-ACGUGGGCGa--AGAGCGUg- -3'
miRNA:   3'- -GCGCaUGCACCCGCgcuUCUCGUAgu -5'
23568 3' -55.6 NC_005261.1 + 63567 0.66 0.887722
Target:  5'- gCGCGgcCGgcaugaUGGGCcCGAAGAGCGgcgCGg -3'
miRNA:   3'- -GCGCauGC------ACCCGcGCUUCUCGUa--GU- -5'
23568 3' -55.6 NC_005261.1 + 65169 0.66 0.894487
Target:  5'- gGCGaacACGUGcgccuuccuaGGCGCGggGGGCGc-- -3'
miRNA:   3'- gCGCa--UGCAC----------CCGCGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 67055 0.68 0.834253
Target:  5'- cCGUGUAgGcGGGCGCGcgcGGGGGC-UCGc -3'
miRNA:   3'- -GCGCAUgCaCCCGCGC---UUCUCGuAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.