miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 3' -55.6 NC_005261.1 + 67665 0.66 0.894487
Target:  5'- cCGCGcGCGgcgccaGGCGCGguGAGCgcGUCAa -3'
miRNA:   3'- -GCGCaUGCac----CCGCGCuuCUCG--UAGU- -5'
23568 3' -55.6 NC_005261.1 + 71959 0.71 0.662216
Target:  5'- gGCGUcgGCGcgGGGCGCGGAGcGCGcggCAg -3'
miRNA:   3'- gCGCA--UGCa-CCCGCGCUUCuCGUa--GU- -5'
23568 3' -55.6 NC_005261.1 + 71983 0.67 0.873511
Target:  5'- gGCGUGC-UGGuGaCGaCGgcGGGCAUCAa -3'
miRNA:   3'- gCGCAUGcACC-C-GC-GCuuCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 73874 0.72 0.621018
Target:  5'- aGCGgguCGUGGGCGUGucccuGAGCuUCGa -3'
miRNA:   3'- gCGCau-GCACCCGCGCuu---CUCGuAGU- -5'
23568 3' -55.6 NC_005261.1 + 74481 0.67 0.871302
Target:  5'- gGCGUGCcUGGGCGgGAucucggcgcucuucGGGGCggCGc -3'
miRNA:   3'- gCGCAUGcACCCGCgCU--------------UCUCGuaGU- -5'
23568 3' -55.6 NC_005261.1 + 75045 0.72 0.579953
Target:  5'- uGCGgAgGUGGGCGCGGgcgugucgcGGAGCAcgUCGg -3'
miRNA:   3'- gCGCaUgCACCCGCGCU---------UCUCGU--AGU- -5'
23568 3' -55.6 NC_005261.1 + 75073 0.7 0.72309
Target:  5'- gCGCGccgGCGgGGGCuCGgcGGGCAUCGu -3'
miRNA:   3'- -GCGCa--UGCaCCCGcGCuuCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 75624 0.69 0.762208
Target:  5'- uCGCGUACGUGGacgacguccaccGCGCGGccGGcGCGUUc -3'
miRNA:   3'- -GCGCAUGCACC------------CGCGCU--UCuCGUAGu -5'
23568 3' -55.6 NC_005261.1 + 79311 0.7 0.703016
Target:  5'- gGCGUGCGcGGGCGCGcuGGuGCGc-- -3'
miRNA:   3'- gCGCAUGCaCCCGCGCu-UCuCGUagu -5'
23568 3' -55.6 NC_005261.1 + 79799 0.72 0.59018
Target:  5'- aCGCGUGCGUGGGCuucucGCGgcGGcuGCAgugCAc -3'
miRNA:   3'- -GCGCAUGCACCCG-----CGCuuCU--CGUa--GU- -5'
23568 3' -55.6 NC_005261.1 + 80053 0.72 0.61072
Target:  5'- uCGCcacugGCGgcGGGCGCGggGGGCGUgGg -3'
miRNA:   3'- -GCGca---UGCa-CCCGCGCuuCUCGUAgU- -5'
23568 3' -55.6 NC_005261.1 + 80865 0.66 0.907316
Target:  5'- gGCGgGCGUcGGGCcgcGCGggGAG-GUCGu -3'
miRNA:   3'- gCGCaUGCA-CCCG---CGCuuCUCgUAGU- -5'
23568 3' -55.6 NC_005261.1 + 81350 0.67 0.842506
Target:  5'- gGCGggGCGgGGGCuuGCGggGGGCGcCGg -3'
miRNA:   3'- gCGCa-UGCaCCCG--CGCuuCUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 81630 0.67 0.849768
Target:  5'- gCGCGcGCGcuUGGcGCGCGggGGGUccgcgccGUCGu -3'
miRNA:   3'- -GCGCaUGC--ACC-CGCGCuuCUCG-------UAGU- -5'
23568 3' -55.6 NC_005261.1 + 82199 0.72 0.621018
Target:  5'- uCGCGcGCGUcacGGGCGCGAuu-GCGUCu -3'
miRNA:   3'- -GCGCaUGCA---CCCGCGCUucuCGUAGu -5'
23568 3' -55.6 NC_005261.1 + 82675 0.71 0.641632
Target:  5'- gGCG-ACGUGGGCGUGGgcGGGGCc--- -3'
miRNA:   3'- gCGCaUGCACCCGCGCU--UCUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 82963 0.73 0.51961
Target:  5'- gGCGgaagACGUGGuGCGCGucGAGCAc-- -3'
miRNA:   3'- gCGCa---UGCACC-CGCGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 83195 0.68 0.834253
Target:  5'- cCGCGcagcUGCGcgGGGCcgGCGGcuacgGGAGCGUCGu -3'
miRNA:   3'- -GCGC----AUGCa-CCCG--CGCU-----UCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 86094 0.67 0.880729
Target:  5'- gCGCGUucuCGUcGGCGCcc-GGGCGUCGg -3'
miRNA:   3'- -GCGCAu--GCAcCCGCGcuuCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 87034 0.75 0.461893
Target:  5'- gCGCGccCGgGGGCGUGgcGAGCGUCGc -3'
miRNA:   3'- -GCGCauGCaCCCGCGCuuCUCGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.