Results 61 - 80 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 5762 | 0.67 | 0.858423 |
Target: 5'- gGCGagGCGcUGccGGCGCGGAGGGCGg-- -3' miRNA: 3'- gCGCa-UGC-AC--CCGCGCUUCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 18728 | 0.67 | 0.863801 |
Target: 5'- cCGCGUGCuGUuggcGGGCgGCGGcgccggcguccccaAGGGCGUCu -3' miRNA: 3'- -GCGCAUG-CA----CCCG-CGCU--------------UCUCGUAGu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 28113 | 0.67 | 0.866074 |
Target: 5'- uGCGUcaGCGUcaggacGGGCGCGccGGGGCGcUCGa -3' miRNA: 3'- gCGCA--UGCA------CCCGCGCu-UCUCGU-AGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 7557 | 0.67 | 0.866074 |
Target: 5'- aCGCGcGCGggcagGGGCucgcCGAGGAGCAgcgCGu -3' miRNA: 3'- -GCGCaUGCa----CCCGc---GCUUCUCGUa--GU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 21285 | 0.67 | 0.866074 |
Target: 5'- cCGCGUcuUGUuGGCGCGGAaGGCGUCc -3' miRNA: 3'- -GCGCAu-GCAcCCGCGCUUcUCGUAGu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 49449 | 0.67 | 0.873511 |
Target: 5'- gCGCGgcgccgGCGgccaGGGC-CGAGGAGCG-CAg -3' miRNA: 3'- -GCGCa-----UGCa---CCCGcGCUUCUCGUaGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 71983 | 0.67 | 0.873511 |
Target: 5'- gGCGUGC-UGGuGaCGaCGgcGGGCAUCAa -3' miRNA: 3'- gCGCAUGcACC-C-GC-GCuuCUCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 98375 | 0.67 | 0.873511 |
Target: 5'- cCGUGUGCcUGGGCGCccGgcGGGaCAUCc -3' miRNA: 3'- -GCGCAUGcACCCGCG--CuuCUC-GUAGu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 129796 | 0.67 | 0.873511 |
Target: 5'- cCGCG-AgG-GGGCGCGGucuguggccguGAGCGUCGu -3' miRNA: 3'- -GCGCaUgCaCCCGCGCUu----------CUCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 105510 | 0.67 | 0.858423 |
Target: 5'- aGCGgACGgagacGGGgGCGggGGGCGg-- -3' miRNA: 3'- gCGCaUGCa----CCCgCGCuuCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 81630 | 0.67 | 0.849768 |
Target: 5'- gCGCGcGCGcuUGGcGCGCGggGGGUccgcgccGUCGu -3' miRNA: 3'- -GCGCaUGC--ACC-CGCGCuuCUCG-------UAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 30756 | 0.67 | 0.850565 |
Target: 5'- cCGCugaucGCGUGGGCGCGGgacugcggugccGGGGCGg-- -3' miRNA: 3'- -GCGca---UGCACCCGCGCU------------UCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 111723 | 0.67 | 0.850565 |
Target: 5'- gCGCGUGCGU-GGCaGCGguGAGUAg-- -3' miRNA: 3'- -GCGCAUGCAcCCG-CGCuuCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 83195 | 0.68 | 0.834253 |
Target: 5'- cCGCGcagcUGCGcgGGGCcgGCGGcuacgGGAGCGUCGu -3' miRNA: 3'- -GCGC----AUGCa-CCCG--CGCU-----UCUCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 104595 | 0.68 | 0.825814 |
Target: 5'- gCGCGgggGCG-GGGUGCGggGcGCGc-- -3' miRNA: 3'- -GCGCa--UGCaCCCGCGCuuCuCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 52124 | 0.68 | 0.825814 |
Target: 5'- gCGCGcuccgACGcccGGGCGcCGAcgagaacgcgcGGAGCAUCAu -3' miRNA: 3'- -GCGCa----UGCa--CCCGC-GCU-----------UCUCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 105568 | 0.68 | 0.817196 |
Target: 5'- gGCGgcgGCGUuaGcGGCGCGggGGGCu--- -3' miRNA: 3'- gCGCa--UGCA--C-CCGCGCuuCUCGuagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 37048 | 0.68 | 0.817196 |
Target: 5'- gGCGgcgGCGUGggacGGCGCGuGGGAGCucuUCGc -3' miRNA: 3'- gCGCa--UGCAC----CCGCGC-UUCUCGu--AGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 94565 | 0.68 | 0.817196 |
Target: 5'- cCGC-UGCaUGGGCGacuCGAAGAGCAcgUCAc -3' miRNA: 3'- -GCGcAUGcACCCGC---GCUUCUCGU--AGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 53566 | 0.68 | 0.808407 |
Target: 5'- gCGCGgcCGcGGGCGCGGGcGGCGcCAg -3' miRNA: 3'- -GCGCauGCaCCCGCGCUUcUCGUaGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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