miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 3' -55.6 NC_005261.1 + 6629 0.67 0.84005
Target:  5'- gCGCGUACGUGcgcgcgcgcgcguaGGCcucggccgucGCGggGGGCAg-- -3'
miRNA:   3'- -GCGCAUGCAC--------------CCG----------CGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 43635 0.67 0.842506
Target:  5'- gCGCGcgcuCGUGGGCG-GAGGGcGCGUUc -3'
miRNA:   3'- -GCGCau--GCACCCGCgCUUCU-CGUAGu -5'
23568 3' -55.6 NC_005261.1 + 4455 0.67 0.842506
Target:  5'- uGCGccgcACGaGGGCGUGGaggcacGGGGCGUCGa -3'
miRNA:   3'- gCGCa---UGCaCCCGCGCU------UCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 95726 0.67 0.842506
Target:  5'- uGCGUGaucacGGGCGCGAcGcGCGUCGc -3'
miRNA:   3'- gCGCAUgca--CCCGCGCUuCuCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 81630 0.67 0.849768
Target:  5'- gCGCGcGCGcuUGGcGCGCGggGGGUccgcgccGUCGu -3'
miRNA:   3'- -GCGCaUGC--ACC-CGCGCuuCUCG-------UAGU- -5'
23568 3' -55.6 NC_005261.1 + 30756 0.67 0.850565
Target:  5'- cCGCugaucGCGUGGGCGCGGgacugcggugccGGGGCGg-- -3'
miRNA:   3'- -GCGca---UGCACCCGCGCU------------UCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 58698 0.67 0.850565
Target:  5'- aCGCGUACGUGcGGCGgGucccgcucgcGGAGCu--- -3'
miRNA:   3'- -GCGCAUGCAC-CCGCgCu---------UCUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 105510 0.67 0.858423
Target:  5'- aGCGgACGgagacGGGgGCGggGGGCGg-- -3'
miRNA:   3'- gCGCaUGCa----CCCgCGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 7557 0.67 0.866074
Target:  5'- aCGCGcGCGggcagGGGCucgcCGAGGAGCAgcgCGu -3'
miRNA:   3'- -GCGCaUGCa----CCCGc---GCUUCUCGUa--GU- -5'
23568 3' -55.6 NC_005261.1 + 18728 0.67 0.863801
Target:  5'- cCGCGUGCuGUuggcGGGCgGCGGcgccggcguccccaAGGGCGUCu -3'
miRNA:   3'- -GCGCAUG-CA----CCCG-CGCU--------------UCUCGUAGu -5'
23568 3' -55.6 NC_005261.1 + 28113 0.67 0.866074
Target:  5'- uGCGUcaGCGUcaggacGGGCGCGccGGGGCGcUCGa -3'
miRNA:   3'- gCGCA--UGCA------CCCGCGCu-UCUCGU-AGU- -5'
23568 3' -55.6 NC_005261.1 + 133715 0.67 0.880729
Target:  5'- cCGCGgcgcccGCGcgGGGCGCGAcuGGGGCccgcgCAg -3'
miRNA:   3'- -GCGCa-----UGCa-CCCGCGCU--UCUCGua---GU- -5'
23568 3' -55.6 NC_005261.1 + 56403 0.67 0.880729
Target:  5'- uCGCauccGCGcGGGCGCG--GGGCGUCAc -3'
miRNA:   3'- -GCGca--UGCaCCCGCGCuuCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 45653 0.67 0.880729
Target:  5'- uGCGcucgcGCGUGGGCGCGcGGcGCG-CGg -3'
miRNA:   3'- gCGCa----UGCACCCGCGCuUCuCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 98717 0.67 0.873511
Target:  5'- gGCGcGCGgcccGGGCcucuucggGCGAGGGGCgAUCAu -3'
miRNA:   3'- gCGCaUGCa---CCCG--------CGCUUCUCG-UAGU- -5'
23568 3' -55.6 NC_005261.1 + 129796 0.67 0.873511
Target:  5'- cCGCG-AgG-GGGCGCGGucuguggccguGAGCGUCGu -3'
miRNA:   3'- -GCGCaUgCaCCCGCGCUu----------CUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 98375 0.67 0.873511
Target:  5'- cCGUGUGCcUGGGCGCccGgcGGGaCAUCc -3'
miRNA:   3'- -GCGCAUGcACCCGCG--CuuCUC-GUAGu -5'
23568 3' -55.6 NC_005261.1 + 71983 0.67 0.873511
Target:  5'- gGCGUGC-UGGuGaCGaCGgcGGGCAUCAa -3'
miRNA:   3'- gCGCAUGcACC-C-GC-GCuuCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 49449 0.67 0.873511
Target:  5'- gCGCGgcgccgGCGgccaGGGC-CGAGGAGCG-CAg -3'
miRNA:   3'- -GCGCa-----UGCa---CCCGcGCUUCUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 21285 0.67 0.866074
Target:  5'- cCGCGUcuUGUuGGCGCGGAaGGCGUCc -3'
miRNA:   3'- -GCGCAu-GCAcCCGCGCUUcUCGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.