Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 111723 | 0.67 | 0.850565 |
Target: 5'- gCGCGUGCGU-GGCaGCGguGAGUAg-- -3' miRNA: 3'- -GCGCAUGCAcCCG-CGCuuCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 111601 | 0.69 | 0.781103 |
Target: 5'- aCGCGga-GUGGGCGCGGcuGGGCu--- -3' miRNA: 3'- -GCGCaugCACCCGCGCUu-CUCGuagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 110511 | 0.67 | 0.863801 |
Target: 5'- aGCGUcacggccgucgucuGCG-GGGCGCaGGAGGGCGc-- -3' miRNA: 3'- gCGCA--------------UGCaCCCGCG-CUUCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 108908 | 0.66 | 0.894487 |
Target: 5'- gGCGaGCG-GGGCGCGggGucggggcccAGCAc-- -3' miRNA: 3'- gCGCaUGCaCCCGCGCuuC---------UCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 108805 | 0.69 | 0.794012 |
Target: 5'- aGCGUGCGccaGGGCGCuGAgccccgccuggaagaAGGGCAUg- -3' miRNA: 3'- gCGCAUGCa--CCCGCG-CU---------------UCUCGUAgu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 108573 | 0.71 | 0.682701 |
Target: 5'- uGCG-ACGUGcGCGCGAAG-GCGUUg -3' miRNA: 3'- gCGCaUGCACcCGCGCUUCuCGUAGu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 108182 | 0.67 | 0.880729 |
Target: 5'- gCGCGgccGCGgcuccGGGCGCG-AGAGCu--- -3' miRNA: 3'- -GCGCa--UGCa----CCCGCGCuUCUCGuagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 107362 | 0.7 | 0.713088 |
Target: 5'- uGCGUcguCGUGGGCGCcGggGcgcccGCGUCc -3' miRNA: 3'- gCGCAu--GCACCCGCG-CuuCu----CGUAGu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 105568 | 0.68 | 0.817196 |
Target: 5'- gGCGgcgGCGUuaGcGGCGCGggGGGCu--- -3' miRNA: 3'- gCGCa--UGCA--C-CCGCGCuuCUCGuagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 105540 | 0.66 | 0.887722 |
Target: 5'- gGCGg--GUGGGCuuuuGCGGAGGGCGg-- -3' miRNA: 3'- gCGCaugCACCCG----CGCUUCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 105510 | 0.67 | 0.858423 |
Target: 5'- aGCGgACGgagacGGGgGCGggGGGCGg-- -3' miRNA: 3'- gCGCaUGCa----CCCgCGCuuCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 104595 | 0.68 | 0.825814 |
Target: 5'- gCGCGgggGCG-GGGUGCGggGcGCGc-- -3' miRNA: 3'- -GCGCa--UGCaCCCGCGCuuCuCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 103149 | 0.66 | 0.887722 |
Target: 5'- cCGCGgcuccgaggGCGaggGGGCGCGGAGAccGCcgCc -3' miRNA: 3'- -GCGCa--------UGCa--CCCGCGCUUCU--CGuaGu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 101371 | 0.73 | 0.529515 |
Target: 5'- aGCGUGCG-GGGCGgGcGGAGCG-CGg -3' miRNA: 3'- gCGCAUGCaCCCGCgCuUCUCGUaGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 100488 | 0.66 | 0.901019 |
Target: 5'- gCGCGgcgcccGCGggGGGCGaCGggGGGC-UCc -3' miRNA: 3'- -GCGCa-----UGCa-CCCGC-GCuuCUCGuAGu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 100319 | 0.73 | 0.539488 |
Target: 5'- uCGCGcagcGCGUGGcGCGCGuAGGGCAUg- -3' miRNA: 3'- -GCGCa---UGCACC-CGCGCuUCUCGUAgu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 99218 | 0.66 | 0.907316 |
Target: 5'- uCGCGgacgcucugcGCGUGGGCGCGcu-GGCA-CAg -3' miRNA: 3'- -GCGCa---------UGCACCCGCGCuucUCGUaGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 98717 | 0.67 | 0.873511 |
Target: 5'- gGCGcGCGgcccGGGCcucuucggGCGAGGGGCgAUCAu -3' miRNA: 3'- gCGCaUGCa---CCCG--------CGCUUCUCG-UAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 98375 | 0.67 | 0.873511 |
Target: 5'- cCGUGUGCcUGGGCGCccGgcGGGaCAUCc -3' miRNA: 3'- -GCGCAUGcACCCGCG--CuuCUC-GUAGu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 98358 | 0.67 | 0.880017 |
Target: 5'- gGCGgGgGUGGGCGCGGGcucuggcGGGCG-CAa -3' miRNA: 3'- gCGCaUgCACCCGCGCUU-------CUCGUaGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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