miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 3' -55.6 NC_005261.1 + 137760 0.68 0.825814
Target:  5'- gCGCGgggGCG-GGGUGCGggGcGCGc-- -3'
miRNA:   3'- -GCGCa--UGCaCCCGCGCuuCuCGUagu -5'
23568 3' -55.6 NC_005261.1 + 136098 0.66 0.901019
Target:  5'- gCGCGccggACGUGagcgcgcucGGCGCGcAGGGCGUg- -3'
miRNA:   3'- -GCGCa---UGCAC---------CCGCGCuUCUCGUAgu -5'
23568 3' -55.6 NC_005261.1 + 135655 0.66 0.919191
Target:  5'- gCGCGgGCGcGGGCGgcccucgcuCGAGGAGC-UCu -3'
miRNA:   3'- -GCGCaUGCaCCCGC---------GCUUCUCGuAGu -5'
23568 3' -55.6 NC_005261.1 + 133854 0.66 0.907316
Target:  5'- cCGCGUGCGcuucgGcGGCGCGGgcgacacucgcgAGGGCcUCu -3'
miRNA:   3'- -GCGCAUGCa----C-CCGCGCU------------UCUCGuAGu -5'
23568 3' -55.6 NC_005261.1 + 133715 0.67 0.880729
Target:  5'- cCGCGgcgcccGCGcgGGGCGCGAcuGGGGCccgcgCAg -3'
miRNA:   3'- -GCGCa-----UGCa-CCCGCGCU--UCUCGua---GU- -5'
23568 3' -55.6 NC_005261.1 + 132666 0.68 0.823247
Target:  5'- cCGCGU--GUGGGUGCGAGGAcaagaugggcuuccGCGUg- -3'
miRNA:   3'- -GCGCAugCACCCGCGCUUCU--------------CGUAgu -5'
23568 3' -55.6 NC_005261.1 + 131221 0.72 0.59018
Target:  5'- cCGCGUACGUGGcCGCGc---GCAUCGa -3'
miRNA:   3'- -GCGCAUGCACCcGCGCuucuCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 129796 0.67 0.873511
Target:  5'- cCGCG-AgG-GGGCGCGGucuguggccguGAGCGUCGu -3'
miRNA:   3'- -GCGCaUgCaCCCGCGCUu----------CUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 129656 0.73 0.529515
Target:  5'- gGCGgcgGCGgcagGGGCGgGAccgGGGGCGUCGc -3'
miRNA:   3'- gCGCa--UGCa---CCCGCgCU---UCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 127756 0.66 0.887722
Target:  5'- aGCGggccGCGgcGGGCGCGAAGAcGCc--- -3'
miRNA:   3'- gCGCa---UGCa-CCCGCGCUUCU-CGuagu -5'
23568 3' -55.6 NC_005261.1 + 127564 0.75 0.452599
Target:  5'- aCGCGUGCGUcggcccgcaccaGGGCGCccuGGGCGUCu -3'
miRNA:   3'- -GCGCAUGCA------------CCCGCGcuuCUCGUAGu -5'
23568 3' -55.6 NC_005261.1 + 126940 0.68 0.817196
Target:  5'- gCGCGgccagggGCGccGGGCGCGggG-GCggCAg -3'
miRNA:   3'- -GCGCa------UGCa-CCCGCGCuuCuCGuaGU- -5'
23568 3' -55.6 NC_005261.1 + 126607 0.7 0.703016
Target:  5'- gGCGccGCGUGGGgGCGgGAGGGCGg-- -3'
miRNA:   3'- gCGCa-UGCACCCgCGC-UUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 123091 0.66 0.913373
Target:  5'- cCGCGgACGgcGGGgGCGAAgGAGUcgCGa -3'
miRNA:   3'- -GCGCaUGCa-CCCgCGCUU-CUCGuaGU- -5'
23568 3' -55.6 NC_005261.1 + 122653 1.08 0.003189
Target:  5'- gCGCGUACGUGGGCGCGAAGAGCAUCAc -3'
miRNA:   3'- -GCGCAUGCACCCGCGCUUCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 121126 0.7 0.713088
Target:  5'- gCGCGgagGCGcGGGCGCGAGcgcGAGUAg-- -3'
miRNA:   3'- -GCGCa--UGCaCCCGCGCUU---CUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 116481 0.67 0.880017
Target:  5'- gCGCGgGCGgggcGGGCGCGcgguauaAAGAGCGc-- -3'
miRNA:   3'- -GCGCaUGCa---CCCGCGC-------UUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 115982 0.66 0.919191
Target:  5'- aGCGga-GcGGGCGCGgAGGGGCGgggCGg -3'
miRNA:   3'- gCGCaugCaCCCGCGC-UUCUCGUa--GU- -5'
23568 3' -55.6 NC_005261.1 + 113044 0.69 0.786669
Target:  5'- gCGCGcgGCGUGGcGCGCcaccgcucgcuGGGCAUCGg -3'
miRNA:   3'- -GCGCa-UGCACC-CGCGcuu--------CUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 112671 0.66 0.913373
Target:  5'- aGCG-GC-UGGaGCGCGAGGGGCugggcGUCGa -3'
miRNA:   3'- gCGCaUGcACC-CGCGCUUCUCG-----UAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.