Results 1 - 20 of 128 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 137760 | 0.68 | 0.825814 |
Target: 5'- gCGCGgggGCG-GGGUGCGggGcGCGc-- -3' miRNA: 3'- -GCGCa--UGCaCCCGCGCuuCuCGUagu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 136098 | 0.66 | 0.901019 |
Target: 5'- gCGCGccggACGUGagcgcgcucGGCGCGcAGGGCGUg- -3' miRNA: 3'- -GCGCa---UGCAC---------CCGCGCuUCUCGUAgu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 135655 | 0.66 | 0.919191 |
Target: 5'- gCGCGgGCGcGGGCGgcccucgcuCGAGGAGC-UCu -3' miRNA: 3'- -GCGCaUGCaCCCGC---------GCUUCUCGuAGu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 133854 | 0.66 | 0.907316 |
Target: 5'- cCGCGUGCGcuucgGcGGCGCGGgcgacacucgcgAGGGCcUCu -3' miRNA: 3'- -GCGCAUGCa----C-CCGCGCU------------UCUCGuAGu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 133715 | 0.67 | 0.880729 |
Target: 5'- cCGCGgcgcccGCGcgGGGCGCGAcuGGGGCccgcgCAg -3' miRNA: 3'- -GCGCa-----UGCa-CCCGCGCU--UCUCGua---GU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 132666 | 0.68 | 0.823247 |
Target: 5'- cCGCGU--GUGGGUGCGAGGAcaagaugggcuuccGCGUg- -3' miRNA: 3'- -GCGCAugCACCCGCGCUUCU--------------CGUAgu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 131221 | 0.72 | 0.59018 |
Target: 5'- cCGCGUACGUGGcCGCGc---GCAUCGa -3' miRNA: 3'- -GCGCAUGCACCcGCGCuucuCGUAGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 129796 | 0.67 | 0.873511 |
Target: 5'- cCGCG-AgG-GGGCGCGGucuguggccguGAGCGUCGu -3' miRNA: 3'- -GCGCaUgCaCCCGCGCUu----------CUCGUAGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 129656 | 0.73 | 0.529515 |
Target: 5'- gGCGgcgGCGgcagGGGCGgGAccgGGGGCGUCGc -3' miRNA: 3'- gCGCa--UGCa---CCCGCgCU---UCUCGUAGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 127756 | 0.66 | 0.887722 |
Target: 5'- aGCGggccGCGgcGGGCGCGAAGAcGCc--- -3' miRNA: 3'- gCGCa---UGCa-CCCGCGCUUCU-CGuagu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 127564 | 0.75 | 0.452599 |
Target: 5'- aCGCGUGCGUcggcccgcaccaGGGCGCccuGGGCGUCu -3' miRNA: 3'- -GCGCAUGCA------------CCCGCGcuuCUCGUAGu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 126940 | 0.68 | 0.817196 |
Target: 5'- gCGCGgccagggGCGccGGGCGCGggG-GCggCAg -3' miRNA: 3'- -GCGCa------UGCa-CCCGCGCuuCuCGuaGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 126607 | 0.7 | 0.703016 |
Target: 5'- gGCGccGCGUGGGgGCGgGAGGGCGg-- -3' miRNA: 3'- gCGCa-UGCACCCgCGC-UUCUCGUagu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 123091 | 0.66 | 0.913373 |
Target: 5'- cCGCGgACGgcGGGgGCGAAgGAGUcgCGa -3' miRNA: 3'- -GCGCaUGCa-CCCgCGCUU-CUCGuaGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 122653 | 1.08 | 0.003189 |
Target: 5'- gCGCGUACGUGGGCGCGAAGAGCAUCAc -3' miRNA: 3'- -GCGCAUGCACCCGCGCUUCUCGUAGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 121126 | 0.7 | 0.713088 |
Target: 5'- gCGCGgagGCGcGGGCGCGAGcgcGAGUAg-- -3' miRNA: 3'- -GCGCa--UGCaCCCGCGCUU---CUCGUagu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 116481 | 0.67 | 0.880017 |
Target: 5'- gCGCGgGCGgggcGGGCGCGcgguauaAAGAGCGc-- -3' miRNA: 3'- -GCGCaUGCa---CCCGCGC-------UUCUCGUagu -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 115982 | 0.66 | 0.919191 |
Target: 5'- aGCGga-GcGGGCGCGgAGGGGCGgggCGg -3' miRNA: 3'- gCGCaugCaCCCGCGC-UUCUCGUa--GU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 113044 | 0.69 | 0.786669 |
Target: 5'- gCGCGcgGCGUGGcGCGCcaccgcucgcuGGGCAUCGg -3' miRNA: 3'- -GCGCa-UGCACC-CGCGcuu--------CUCGUAGU- -5' |
|||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 112671 | 0.66 | 0.913373 |
Target: 5'- aGCG-GC-UGGaGCGCGAGGGGCugggcGUCGa -3' miRNA: 3'- gCGCaUGcACC-CGCGCUUCUCG-----UAGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home