miRNA display CGI


Results 81 - 100 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 3' -55.6 NC_005261.1 + 132666 0.68 0.823247
Target:  5'- cCGCGU--GUGGGUGCGAGGAcaagaugggcuuccGCGUg- -3'
miRNA:   3'- -GCGCAugCACCCGCGCUUCU--------------CGUAgu -5'
23568 3' -55.6 NC_005261.1 + 37048 0.68 0.817196
Target:  5'- gGCGgcgGCGUGggacGGCGCGuGGGAGCucuUCGc -3'
miRNA:   3'- gCGCa--UGCAC----CCGCGC-UUCUCGu--AGU- -5'
23568 3' -55.6 NC_005261.1 + 94565 0.68 0.817196
Target:  5'- cCGC-UGCaUGGGCGacuCGAAGAGCAcgUCAc -3'
miRNA:   3'- -GCGcAUGcACCCGC---GCUUCUCGU--AGU- -5'
23568 3' -55.6 NC_005261.1 + 1050 0.68 0.817196
Target:  5'- gGCGgcgGCGUuaGcGGCGCGggGGGCu--- -3'
miRNA:   3'- gCGCa--UGCA--C-CCGCGCuuCUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 126940 0.68 0.817196
Target:  5'- gCGCGgccagggGCGccGGGCGCGggG-GCggCAg -3'
miRNA:   3'- -GCGCa------UGCa-CCCGCGCuuCuCGuaGU- -5'
23568 3' -55.6 NC_005261.1 + 105568 0.68 0.817196
Target:  5'- gGCGgcgGCGUuaGcGGCGCGggGGGCu--- -3'
miRNA:   3'- gCGCa--UGCA--C-CCGCGCuuCUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 53566 0.68 0.808407
Target:  5'- gCGCGgcCGcGGGCGCGGGcGGCGcCAg -3'
miRNA:   3'- -GCGCauGCaCCCGCGCUUcUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 51543 0.68 0.799456
Target:  5'- gCGCGUACGUGGGcCGCcucgccgggcuGguGGGCGcCAu -3'
miRNA:   3'- -GCGCAUGCACCC-GCG-----------CuuCUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 37161 0.68 0.799456
Target:  5'- cCGCGgGCGUGGugcuggggcugcGCGCGGAcGAGCAc-- -3'
miRNA:   3'- -GCGCaUGCACC------------CGCGCUU-CUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 108805 0.69 0.794012
Target:  5'- aGCGUGCGccaGGGCGCuGAgccccgccuggaagaAGGGCAUg- -3'
miRNA:   3'- gCGCAUGCa--CCCGCG-CU---------------UCUCGUAgu -5'
23568 3' -55.6 NC_005261.1 + 113044 0.69 0.786669
Target:  5'- gCGCGcgGCGUGGcGCGCcaccgcucgcuGGGCAUCGg -3'
miRNA:   3'- -GCGCa-UGCACC-CGCGcuu--------CUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 111601 0.69 0.781103
Target:  5'- aCGCGga-GUGGGCGCGGcuGGGCu--- -3'
miRNA:   3'- -GCGCaugCACCCGCGCUu-CUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 75624 0.69 0.762208
Target:  5'- uCGCGUACGUGGacgacguccaccGCGCGGccGGcGCGUUc -3'
miRNA:   3'- -GCGCAUGCACC------------CGCGCU--UCuCGUAGu -5'
23568 3' -55.6 NC_005261.1 + 55281 0.7 0.733012
Target:  5'- gCGCGccggagGCGgGGGCGCuGAAGAGCcggugcgggggGUCAg -3'
miRNA:   3'- -GCGCa-----UGCaCCCGCG-CUUCUCG-----------UAGU- -5'
23568 3' -55.6 NC_005261.1 + 92612 0.7 0.733012
Target:  5'- gCGCGUGcCGgggccccGGGCGCG-AGAGCGg-- -3'
miRNA:   3'- -GCGCAU-GCa------CCCGCGCuUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 75073 0.7 0.72309
Target:  5'- gCGCGccgGCGgGGGCuCGgcGGGCAUCGu -3'
miRNA:   3'- -GCGCa--UGCaCCCGcGCuuCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 107362 0.7 0.713088
Target:  5'- uGCGUcguCGUGGGCGCcGggGcgcccGCGUCc -3'
miRNA:   3'- gCGCAu--GCACCCGCG-CuuCu----CGUAGu -5'
23568 3' -55.6 NC_005261.1 + 29726 0.7 0.713088
Target:  5'- uGCGcgGCGUGGcCGCGGGuAGCGUCGc -3'
miRNA:   3'- gCGCa-UGCACCcGCGCUUcUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 121126 0.7 0.713088
Target:  5'- gCGCGgagGCGcGGGCGCGAGcgcGAGUAg-- -3'
miRNA:   3'- -GCGCa--UGCaCCCGCGCUU---CUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 90227 0.7 0.713088
Target:  5'- uCGCGcgGCGggcGGGCGCGccgucGGGUAUCAg -3'
miRNA:   3'- -GCGCa-UGCa--CCCGCGCuu---CUCGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.