Results 61 - 80 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 105510 | 0.67 | 0.858423 |
Target: 5'- aGCGgACGgagacGGGgGCGggGGGCGg-- -3' miRNA: 3'- gCGCaUGCa----CCCgCGCuuCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 13669 | 0.67 | 0.858423 |
Target: 5'- cCGCGggggggGCGcgGGGCGCGc-GGGCGUgGg -3' miRNA: 3'- -GCGCa-----UGCa-CCCGCGCuuCUCGUAgU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 5762 | 0.67 | 0.858423 |
Target: 5'- gGCGagGCGcUGccGGCGCGGAGGGCGg-- -3' miRNA: 3'- gCGCa-UGC-AC--CCGCGCUUCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 7205 | 0.67 | 0.850565 |
Target: 5'- gCGCGUGCGU-GGCaGCGguGAGUAg-- -3' miRNA: 3'- -GCGCAUGCAcCCG-CGCuuCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 30756 | 0.67 | 0.850565 |
Target: 5'- cCGCugaucGCGUGGGCGCGGgacugcggugccGGGGCGg-- -3' miRNA: 3'- -GCGca---UGCACCCGCGCU------------UCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 111723 | 0.67 | 0.850565 |
Target: 5'- gCGCGUGCGU-GGCaGCGguGAGUAg-- -3' miRNA: 3'- -GCGCAUGCAcCCG-CGCuuCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 58698 | 0.67 | 0.850565 |
Target: 5'- aCGCGUACGUGcGGCGgGucccgcucgcGGAGCu--- -3' miRNA: 3'- -GCGCAUGCAC-CCGCgCu---------UCUCGuagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 81630 | 0.67 | 0.849768 |
Target: 5'- gCGCGcGCGcuUGGcGCGCGggGGGUccgcgccGUCGu -3' miRNA: 3'- -GCGCaUGC--ACC-CGCGCuuCUCG-------UAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 81350 | 0.67 | 0.842506 |
Target: 5'- gGCGggGCGgGGGCuuGCGggGGGCGcCGg -3' miRNA: 3'- gCGCa-UGCaCCCG--CGCuuCUCGUaGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 95726 | 0.67 | 0.842506 |
Target: 5'- uGCGUGaucacGGGCGCGAcGcGCGUCGc -3' miRNA: 3'- gCGCAUgca--CCCGCGCUuCuCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 4455 | 0.67 | 0.842506 |
Target: 5'- uGCGccgcACGaGGGCGUGGaggcacGGGGCGUCGa -3' miRNA: 3'- gCGCa---UGCaCCCGCGCU------UCUCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 43635 | 0.67 | 0.842506 |
Target: 5'- gCGCGcgcuCGUGGGCG-GAGGGcGCGUUc -3' miRNA: 3'- -GCGCau--GCACCCGCgCUUCU-CGUAGu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 6629 | 0.67 | 0.84005 |
Target: 5'- gCGCGUACGUGcgcgcgcgcgcguaGGCcucggccgucGCGggGGGCAg-- -3' miRNA: 3'- -GCGCAUGCAC--------------CCG----------CGCuuCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 83195 | 0.68 | 0.834253 |
Target: 5'- cCGCGcagcUGCGcgGGGCcgGCGGcuacgGGAGCGUCGu -3' miRNA: 3'- -GCGC----AUGCa-CCCG--CGCU-----UCUCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 67055 | 0.68 | 0.834253 |
Target: 5'- cCGUGUAgGcGGGCGCGcgcGGGGGC-UCGc -3' miRNA: 3'- -GCGCAUgCaCCCGCGC---UUCUCGuAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 104595 | 0.68 | 0.825814 |
Target: 5'- gCGCGgggGCG-GGGUGCGggGcGCGc-- -3' miRNA: 3'- -GCGCa--UGCaCCCGCGCuuCuCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 89111 | 0.68 | 0.825814 |
Target: 5'- gCGCGcGCGUGGcacuGCGCGcgccGGAGCAgCAc -3' miRNA: 3'- -GCGCaUGCACC----CGCGCu---UCUCGUaGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 137760 | 0.68 | 0.825814 |
Target: 5'- gCGCGgggGCG-GGGUGCGggGcGCGc-- -3' miRNA: 3'- -GCGCa--UGCaCCCGCGCuuCuCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 77 | 0.68 | 0.825814 |
Target: 5'- gCGCGgggGCG-GGGUGCGggGcGCGc-- -3' miRNA: 3'- -GCGCa--UGCaCCCGCGCuuCuCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 52124 | 0.68 | 0.825814 |
Target: 5'- gCGCGcuccgACGcccGGGCGcCGAcgagaacgcgcGGAGCAUCAu -3' miRNA: 3'- -GCGCa----UGCa--CCCGC-GCU-----------UCUCGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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