miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 65531 0.67 0.378134
Target:  5'- cCAgCGCGGCCgcgcGGGcagcaGCGCgUGCCAGg -3'
miRNA:   3'- -GUgGCGCCGGa---CCCc----CGCGaACGGUU- -5'
23569 3' -64.7 NC_005261.1 + 55283 0.67 0.378134
Target:  5'- gCGCCGgaGGC--GGGGGCGCUgaagaGCCGGu -3'
miRNA:   3'- -GUGGCg-CCGgaCCCCCGCGAa----CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 22756 0.67 0.378134
Target:  5'- gGCgGCGGCCcacgcgucUGGGGGCGg--GCCc- -3'
miRNA:   3'- gUGgCGCCGG--------ACCCCCGCgaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 58289 0.67 0.374958
Target:  5'- gGCCgGCGcGCCgGGGGGCGCggggagggggcgGCCc- -3'
miRNA:   3'- gUGG-CGC-CGGaCCCCCGCGaa----------CGGuu -5'
23569 3' -64.7 NC_005261.1 + 33618 0.67 0.370229
Target:  5'- gCGgCGgGGCCcGGGGGCGC--GCCc- -3'
miRNA:   3'- -GUgGCgCCGGaCCCCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 138135 0.67 0.370229
Target:  5'- gCGgCGgGGCCcGGGGGCGC--GCCc- -3'
miRNA:   3'- -GUgGCgCCGGaCCCCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 452 0.67 0.370229
Target:  5'- gCGgCGgGGCCcGGGGGCGC--GCCc- -3'
miRNA:   3'- -GUgGCgCCGGaCCCCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 84669 0.67 0.370229
Target:  5'- gGCCGCuagugcGCCUGGGccgcGGCGCg-GCCGAa -3'
miRNA:   3'- gUGGCGc-----CGGACCC----CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 119127 0.68 0.362438
Target:  5'- gGCCGCGGCCgc--GGCGCg-GCCAu -3'
miRNA:   3'- gUGGCGCCGGacccCCGCGaaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 78113 0.68 0.362438
Target:  5'- -uUCGCGGCCUacgugcccgcGGGcGCGCUgGCCAGc -3'
miRNA:   3'- guGGCGCCGGA----------CCCcCGCGAaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 135823 0.68 0.362438
Target:  5'- cCGCCGCgcggGGCCcGcGGGcGCGCUcGCCGc -3'
miRNA:   3'- -GUGGCG----CCGGaC-CCC-CGCGAaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 31306 0.68 0.362438
Target:  5'- cCGCCGCgcggGGCCcGcGGGcGCGCUcGCCGc -3'
miRNA:   3'- -GUGGCG----CCGGaC-CCC-CGCGAaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 35786 0.68 0.362438
Target:  5'- gCGCCGaGGCC-GGGcGGCGC--GCCGAg -3'
miRNA:   3'- -GUGGCgCCGGaCCC-CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 12640 0.68 0.354762
Target:  5'- cCGgCGCGGUCUGGGGccGCGCcgGCgCGAc -3'
miRNA:   3'- -GUgGCGCCGGACCCC--CGCGaaCG-GUU- -5'
23569 3' -64.7 NC_005261.1 + 41508 0.68 0.354762
Target:  5'- gCGCCGC-GCCcGGGuGGUGCccGCCAAc -3'
miRNA:   3'- -GUGGCGcCGGaCCC-CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 89090 0.68 0.354762
Target:  5'- gGCUGCGGCCcGGGcGCGCUgGCg-- -3'
miRNA:   3'- gUGGCGCCGGaCCCcCGCGAaCGguu -5'
23569 3' -64.7 NC_005261.1 + 41127 0.68 0.347201
Target:  5'- gGCCGCGGCCcGGcuGGCGCccccgGCCc- -3'
miRNA:   3'- gUGGCGCCGGaCCc-CCGCGaa---CGGuu -5'
23569 3' -64.7 NC_005261.1 + 107148 0.68 0.347201
Target:  5'- gGCCGCGGCCaUGGaGGCG---GCCAGc -3'
miRNA:   3'- gUGGCGCCGG-ACCcCCGCgaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 51926 0.68 0.347201
Target:  5'- gGCCGCGGCCUGGuccCGCUcgucGCCGg -3'
miRNA:   3'- gUGGCGCCGGACCcccGCGAa---CGGUu -5'
23569 3' -64.7 NC_005261.1 + 123104 0.68 0.347201
Target:  5'- uCGCCGCGGC--GGGaaaguGGCGCUUGgCAu -3'
miRNA:   3'- -GUGGCGCCGgaCCC-----CCGCGAACgGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.