miRNA display CGI


Results 61 - 80 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 34086 0.67 0.410865
Target:  5'- cCGCCGCuGGCUgGaGGGGCGCccaaccUGCCc- -3'
miRNA:   3'- -GUGGCG-CCGGaC-CCCCGCGa-----ACGGuu -5'
23569 3' -64.7 NC_005261.1 + 15864 0.67 0.410865
Target:  5'- gGCCGCGGU--GGGGccGCGCgaGCCGc -3'
miRNA:   3'- gUGGCGCCGgaCCCC--CGCGaaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 133712 0.67 0.410865
Target:  5'- uCGCCGCGGCgCccgcGcGGGGCGCgacugggGCCc- -3'
miRNA:   3'- -GUGGCGCCG-Ga---C-CCCCGCGaa-----CGGuu -5'
23569 3' -64.7 NC_005261.1 + 90617 0.67 0.402519
Target:  5'- gGCCGCGGCCgcccccgcaGGGGGCgGCUc-CCu- -3'
miRNA:   3'- gUGGCGCCGGa--------CCCCCG-CGAacGGuu -5'
23569 3' -64.7 NC_005261.1 + 127333 0.67 0.402519
Target:  5'- cCGCgGgGGCCggagcgGcGGGGCGCUggGCCc- -3'
miRNA:   3'- -GUGgCgCCGGa-----C-CCCCGCGAa-CGGuu -5'
23569 3' -64.7 NC_005261.1 + 133526 0.67 0.402519
Target:  5'- uCACCGUGGaCCUcucGGGGCGCgcaGCgCAGc -3'
miRNA:   3'- -GUGGCGCC-GGAc--CCCCGCGaa-CG-GUU- -5'
23569 3' -64.7 NC_005261.1 + 106251 0.67 0.39428
Target:  5'- gCACCGCGGUgcgcGGGcccaGGCGCgugGCCAc -3'
miRNA:   3'- -GUGGCGCCGga--CCC----CCGCGaa-CGGUu -5'
23569 3' -64.7 NC_005261.1 + 1734 0.67 0.39428
Target:  5'- gCACCGCGGUgcgcGGGcccaGGCGCgugGCCAc -3'
miRNA:   3'- -GUGGCGCCGga--CCC----CCGCGaa-CGGUu -5'
23569 3' -64.7 NC_005261.1 + 38604 0.67 0.39428
Target:  5'- -cCCGCGG-CUGGcGGGUGUUgGCCGc -3'
miRNA:   3'- guGGCGCCgGACC-CCCGCGAaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 107066 0.67 0.386151
Target:  5'- gCGCCGCGGCgCUGGgcgcGGGCGUgUGgUAc -3'
miRNA:   3'- -GUGGCGCCG-GACC----CCCGCGaACgGUu -5'
23569 3' -64.7 NC_005261.1 + 118367 0.67 0.386151
Target:  5'- gGCCG-GGCgCUGGGGcGCGCggcCCGAg -3'
miRNA:   3'- gUGGCgCCG-GACCCC-CGCGaacGGUU- -5'
23569 3' -64.7 NC_005261.1 + 2549 0.67 0.386151
Target:  5'- gCGCCGCGGCgCUGGgcgcGGGCGUgUGgUAc -3'
miRNA:   3'- -GUGGCGCCG-GACC----CCCGCGaACgGUu -5'
23569 3' -64.7 NC_005261.1 + 81343 0.67 0.386151
Target:  5'- gGCCGuCGGCggGGcGGGgGCUUGCgGGg -3'
miRNA:   3'- gUGGC-GCCGgaCC-CCCgCGAACGgUU- -5'
23569 3' -64.7 NC_005261.1 + 98684 0.67 0.386151
Target:  5'- cCGCCGgGGCC-GGaGGCGCg-GCCGGa -3'
miRNA:   3'- -GUGGCgCCGGaCCcCCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 60514 0.67 0.386151
Target:  5'- gCGCCGCuuGGCUgGGGGGCGgcgGUCGAg -3'
miRNA:   3'- -GUGGCG--CCGGaCCCCCGCgaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 74518 0.67 0.385344
Target:  5'- gCGCCGgGGCCaUGGcgcuuGGGCGCcuagaguUUGCCu- -3'
miRNA:   3'- -GUGGCgCCGG-ACC-----CCCGCG-------AACGGuu -5'
23569 3' -64.7 NC_005261.1 + 29078 0.67 0.378134
Target:  5'- uGCC-CGGCCUGGugcuguGGCGCcUGCCu- -3'
miRNA:   3'- gUGGcGCCGGACCc-----CCGCGaACGGuu -5'
23569 3' -64.7 NC_005261.1 + 96707 0.67 0.378134
Target:  5'- aGCCGgGG-CUGGGGGUggaaaaaugGCUgcagGCCAAc -3'
miRNA:   3'- gUGGCgCCgGACCCCCG---------CGAa---CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 127273 0.67 0.378134
Target:  5'- gGCgGCGGCCcacgcgucUGGGGGCGg--GCCc- -3'
miRNA:   3'- gUGgCGCCGG--------ACCCCCGCgaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 6793 0.67 0.378134
Target:  5'- aGgCGCGGCgCaagGGGGGCGCcggcGCCGc -3'
miRNA:   3'- gUgGCGCCG-Ga--CCCCCGCGaa--CGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.