miRNA display CGI


Results 61 - 80 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 37398 0.7 0.242021
Target:  5'- uCGCCGagcuccCGGCCUGGGcGGCGCagGCgCAc -3'
miRNA:   3'- -GUGGC------GCCGGACCC-CCGCGaaCG-GUu -5'
23569 3' -64.7 NC_005261.1 + 93827 0.7 0.247737
Target:  5'- cCGCCGCaGCCgccGGGcGGCGCc-GCCGAg -3'
miRNA:   3'- -GUGGCGcCGGa--CCC-CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 23852 0.7 0.252976
Target:  5'- uCGCCGgGGCaggccggCUGGGGcGgGCUUGCCc- -3'
miRNA:   3'- -GUGGCgCCG-------GACCCC-CgCGAACGGuu -5'
23569 3' -64.7 NC_005261.1 + 128369 0.7 0.252976
Target:  5'- uCGCCGgGGCaggccggCUGGGGcGgGCUUGCCc- -3'
miRNA:   3'- -GUGGCgCCG-------GACCCC-CgCGAACGGuu -5'
23569 3' -64.7 NC_005261.1 + 128312 0.7 0.252976
Target:  5'- uCGCCGgGGCaggccggCUGGGGcGgGCUUGCCc- -3'
miRNA:   3'- -GUGGCgCCG-------GACCCC-CgCGAACGGuu -5'
23569 3' -64.7 NC_005261.1 + 23795 0.7 0.252976
Target:  5'- uCGCCGgGGCaggccggCUGGGGcGgGCUUGCCc- -3'
miRNA:   3'- -GUGGCgCCG-------GACCCC-CgCGAACGGuu -5'
23569 3' -64.7 NC_005261.1 + 55688 0.7 0.253564
Target:  5'- gGCCGCGGgCgaggagGGGGGCGaggaugggGCCGAc -3'
miRNA:   3'- gUGGCGCCgGa-----CCCCCGCgaa-----CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 34852 0.7 0.253564
Target:  5'- gGCCGCGGCgC-GGcGGCGCgcgGCCGAg -3'
miRNA:   3'- gUGGCGCCG-GaCCcCCGCGaa-CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 21023 0.7 0.259503
Target:  5'- aCACCGagcCCUGGGGGCGCgcaccgugcGCCAu -3'
miRNA:   3'- -GUGGCgccGGACCCCCGCGaa-------CGGUu -5'
23569 3' -64.7 NC_005261.1 + 31986 0.7 0.259503
Target:  5'- gGCgGCGGCCcGGuaGGGCGCggcgGCCGc -3'
miRNA:   3'- gUGgCGCCGGaCC--CCCGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 95749 0.7 0.259503
Target:  5'- cCGCCGCcGCCgccGGGGGCGCcgggaGCCu- -3'
miRNA:   3'- -GUGGCGcCGGa--CCCCCGCGaa---CGGuu -5'
23569 3' -64.7 NC_005261.1 + 36774 0.7 0.265555
Target:  5'- cCGCCgGCGGCgCUGGGGccaGCGCUggaccgcGCCGc -3'
miRNA:   3'- -GUGG-CGCCG-GACCCC---CGCGAa------CGGUu -5'
23569 3' -64.7 NC_005261.1 + 70642 0.7 0.265555
Target:  5'- gCGCCGCGGCgCUGaGGuucGGCGCcgcgGCCGc -3'
miRNA:   3'- -GUGGCGCCG-GAC-CC---CCGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 13666 0.7 0.265555
Target:  5'- cCGCCGCGGg--GGGGGCGCgggGCg-- -3'
miRNA:   3'- -GUGGCGCCggaCCCCCGCGaa-CGguu -5'
23569 3' -64.7 NC_005261.1 + 78783 0.7 0.2711
Target:  5'- aCGCCGCGGCCgcgcugcUGccGGCGCcUGCCGGg -3'
miRNA:   3'- -GUGGCGCCGG-------ACccCCGCGaACGGUU- -5'
23569 3' -64.7 NC_005261.1 + 8807 0.7 0.271722
Target:  5'- cCGCCGagGGCUUGaaGGGGCGCccGCCGGg -3'
miRNA:   3'- -GUGGCg-CCGGAC--CCCCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 113324 0.7 0.271722
Target:  5'- cCGCCGagGGCUUGaaGGGGCGCccGCCGGg -3'
miRNA:   3'- -GUGGCg-CCGGAC--CCCCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 135694 0.7 0.271722
Target:  5'- gCGCCGCGGCgCUGGcGGC-CUacUGCCGc -3'
miRNA:   3'- -GUGGCGCCG-GACCcCCGcGA--ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 31176 0.7 0.271722
Target:  5'- gCGCCGCGGCgCUGGcGGC-CUacUGCCGc -3'
miRNA:   3'- -GUGGCGCCG-GACCcCCGcGA--ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 84917 0.7 0.27422
Target:  5'- aCACCuGCGGCCuccUgaucgacccgcgcacGGGGGCGCUUGgCGc -3'
miRNA:   3'- -GUGG-CGCCGG---A---------------CCCCCGCGAACgGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.