miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 28253 0.71 0.205037
Target:  5'- aGCgGgGGCUgcucggGGGGGCGCUguUGCCGc -3'
miRNA:   3'- gUGgCgCCGGa-----CCCCCGCGA--ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 17137 0.71 0.205037
Target:  5'- -cCCGCacGGCCUGGaGGCGCUggcgGCCGc -3'
miRNA:   3'- guGGCG--CCGGACCcCCGCGAa---CGGUu -5'
23569 3' -64.7 NC_005261.1 + 132770 0.71 0.205037
Target:  5'- aGCgGgGGCUgcucggGGGGGCGCUguUGCCGc -3'
miRNA:   3'- gUGgCgCCGGa-----CCCCCGCGA--ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 52230 0.71 0.207012
Target:  5'- gCGCUGCGGCCgguacgguuucgugGGaGGGCGCUguccgcGCCGGg -3'
miRNA:   3'- -GUGGCGCCGGa-------------CC-CCCGCGAa-----CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 31096 0.71 0.210004
Target:  5'- gGCCGCGGCCgu-GGGCGCcgucGCCGg -3'
miRNA:   3'- gUGGCGCCGGaccCCCGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 88707 0.71 0.215075
Target:  5'- cCGCCGUugaccuGGCCUGcGGGGUGCgcgaugaggGCCAGc -3'
miRNA:   3'- -GUGGCG------CCGGAC-CCCCGCGaa-------CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 135521 0.71 0.215075
Target:  5'- gGCCGgGGCCaGGGgcccGGCGCcgGCCAAa -3'
miRNA:   3'- gUGGCgCCGGaCCC----CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 55848 0.71 0.215075
Target:  5'- -cCCGCGGgCUGGGcGGCGCUgGCg-- -3'
miRNA:   3'- guGGCGCCgGACCC-CCGCGAaCGguu -5'
23569 3' -64.7 NC_005261.1 + 31003 0.71 0.215075
Target:  5'- gGCCGgGGCCaGGGgcccGGCGCcgGCCAAa -3'
miRNA:   3'- gUGGCgCCGGaCCC----CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 35119 0.71 0.22025
Target:  5'- gGCgCGCuGGCgCcGGGGGCGCUgGCCGGg -3'
miRNA:   3'- gUG-GCG-CCG-GaCCCCCGCGAaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 103117 0.71 0.225531
Target:  5'- aCGCCGcCGGCggCUGGGGG-GCUcGCCGc -3'
miRNA:   3'- -GUGGC-GCCG--GACCCCCgCGAaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 35687 0.71 0.225531
Target:  5'- cCGCCGgGcGCCUGGGGcCGCaggcgGCCAAg -3'
miRNA:   3'- -GUGGCgC-CGGACCCCcGCGaa---CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 2876 0.71 0.228751
Target:  5'- aCGCgGCGGCCcucGGGGGCGaaccgcuccggGCCAAa -3'
miRNA:   3'- -GUGgCGCCGGa--CCCCCGCgaa--------CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 36587 0.71 0.230919
Target:  5'- cCGCCGCGGCCaccggGGGGGgGCagcGCUc- -3'
miRNA:   3'- -GUGGCGCCGGa----CCCCCgCGaa-CGGuu -5'
23569 3' -64.7 NC_005261.1 + 97480 0.71 0.230919
Target:  5'- aACCGUcgggggGGCCcuUGGGGGCGCcgggGCCGc -3'
miRNA:   3'- gUGGCG------CCGG--ACCCCCGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 63083 0.71 0.230919
Target:  5'- uGCCGCGcgucGCCaGGGGGCGCUcGgCGAu -3'
miRNA:   3'- gUGGCGC----CGGaCCCCCGCGAaCgGUU- -5'
23569 3' -64.7 NC_005261.1 + 1180 0.7 0.234756
Target:  5'- gCGCCGCGGCCgGGGccggggccgggcgcGGCGCggaccccccGCCGAu -3'
miRNA:   3'- -GUGGCGCCGGaCCC--------------CCGCGaa-------CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 105698 0.7 0.234756
Target:  5'- gCGCCGCGGCCgGGGccggggccgggcgcGGCGCggaccccccGCCGAu -3'
miRNA:   3'- -GUGGCGCCGGaCCC--------------CCGCGaa-------CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 89174 0.7 0.242021
Target:  5'- gCACCGCGGacaaCCUGGagccgcucgcGGGCGCcgagGCCGAc -3'
miRNA:   3'- -GUGGCGCC----GGACC----------CCCGCGaa--CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 37398 0.7 0.242021
Target:  5'- uCGCCGagcuccCGGCCUGGGcGGCGCagGCgCAc -3'
miRNA:   3'- -GUGGC------GCCGGACCC-CCGCGaaCG-GUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.