Results 41 - 60 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 37525 | 0.76 | 0.097178 |
Target: 5'- gGCCGCGGCUcGGGcGGCGCgcGCCGc -3' miRNA: 3'- gUGGCGCCGGaCCC-CCGCGaaCGGUu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 34460 | 0.78 | 0.06596 |
Target: 5'- -cUCGCGGCCUGGGuGGCGCUgcUGCaCGAg -3' miRNA: 3'- guGGCGCCGGACCC-CCGCGA--ACG-GUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 60136 | 0.79 | 0.059424 |
Target: 5'- gGCCGgGGCCUGGGccGGCGCggggGCCAGc -3' miRNA: 3'- gUGGCgCCGGACCC--CCGCGaa--CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 64761 | 0.79 | 0.055955 |
Target: 5'- gCGCCGCGGCCcaggGGGGGCGCgcggacgcggacgcgGCCGg -3' miRNA: 3'- -GUGGCGCCGGa---CCCCCGCGaa-------------CGGUu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 49889 | 0.8 | 0.053517 |
Target: 5'- aCGCCGCGGCg-GGGGGCGCc-GCCAGc -3' miRNA: 3'- -GUGGCGCCGgaCCCCCGCGaaCGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 103502 | 0.73 | 0.164763 |
Target: 5'- -cCCGCGGCCgccaGGGGGCGCcgaccGCUGAg -3' miRNA: 3'- guGGCGCCGGa---CCCCCGCGaa---CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 50638 | 0.73 | 0.168447 |
Target: 5'- uCGCCGgcaccaagaccacCGGCCUGGGcGGCGCggggcugacgGCCAAg -3' miRNA: 3'- -GUGGC-------------GCCGGACCC-CCGCGaa--------CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 35119 | 0.71 | 0.22025 |
Target: 5'- gGCgCGCuGGCgCcGGGGGCGCUgGCCGGg -3' miRNA: 3'- gUG-GCG-CCG-GaCCCCCGCGAaCGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 135521 | 0.71 | 0.215075 |
Target: 5'- gGCCGgGGCCaGGGgcccGGCGCcgGCCAAa -3' miRNA: 3'- gUGGCgCCGGaCCC----CCGCGaaCGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 55848 | 0.71 | 0.215075 |
Target: 5'- -cCCGCGGgCUGGGcGGCGCUgGCg-- -3' miRNA: 3'- guGGCGCCgGACCC-CCGCGAaCGguu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 31096 | 0.71 | 0.210004 |
Target: 5'- gGCCGCGGCCgu-GGGCGCcgucGCCGg -3' miRNA: 3'- gUGGCGCCGGaccCCCGCGaa--CGGUu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 17137 | 0.71 | 0.205037 |
Target: 5'- -cCCGCacGGCCUGGaGGCGCUggcgGCCGc -3' miRNA: 3'- guGGCG--CCGGACCcCCGCGAa---CGGUu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 132770 | 0.71 | 0.205037 |
Target: 5'- aGCgGgGGCUgcucggGGGGGCGCUguUGCCGc -3' miRNA: 3'- gUGgCgCCGGa-----CCCCCGCGA--ACGGUu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 103146 | 0.72 | 0.17733 |
Target: 5'- uCACCGCGGCUccgagggcgaGGGGGCGCggagaccGCCGc -3' miRNA: 3'- -GUGGCGCCGGa---------CCCCCGCGaa-----CGGUu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 53790 | 0.72 | 0.176898 |
Target: 5'- gCugCGCGGCCcGGGGGCuggucgccggaggGCgcgGCCGAc -3' miRNA: 3'- -GugGCGCCGGaCCCCCG-------------CGaa-CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 56818 | 0.72 | 0.173049 |
Target: 5'- aCGCCGCcuguGCCUGGGGGaGCUggggagGCCGGg -3' miRNA: 3'- -GUGGCGc---CGGACCCCCgCGAa-----CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 38988 | 0.72 | 0.173049 |
Target: 5'- --aCGCGGCCcGGcGGGCGCgacGCCGAc -3' miRNA: 3'- gugGCGCCGGaCC-CCCGCGaa-CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 70946 | 0.72 | 0.173049 |
Target: 5'- gCGCgGCGGCggGGGGGCuGCUgcugGCCGGg -3' miRNA: 3'- -GUGgCGCCGgaCCCCCG-CGAa---CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 46756 | 0.72 | 0.172626 |
Target: 5'- gGCCGCGGCggcgccgCUGGGaGGCGCgggcgggGCCGu -3' miRNA: 3'- gUGGCGCCG-------GACCC-CCGCGaa-----CGGUu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 79083 | 0.73 | 0.168861 |
Target: 5'- gCGCCGCGcGCCcGGGGcGCGCcgGCCu- -3' miRNA: 3'- -GUGGCGC-CGGaCCCC-CGCGaaCGGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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