Results 41 - 60 of 231 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 127333 | 0.67 | 0.402519 |
Target: 5'- cCGCgGgGGCCggagcgGcGGGGCGCUggGCCc- -3' miRNA: 3'- -GUGgCgCCGGa-----C-CCCCGCGAa-CGGuu -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 108186 | 0.66 | 0.427877 |
Target: 5'- gGCCGCGGCUcc-GGGCGCgagagcugcGCCAGc -3' miRNA: 3'- gUGGCGCCGGaccCCCGCGaa-------CGGUU- -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 126070 | 0.66 | 0.46311 |
Target: 5'- aGCCGCccgccGGCCUcGGcGGGCGCgc-CCAu -3' miRNA: 3'- gUGGCG-----CCGGA-CC-CCCGCGaacGGUu -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 107738 | 0.67 | 0.410865 |
Target: 5'- gCGCCuCGGCCgcgGGGGGgGCcacGCCc- -3' miRNA: 3'- -GUGGcGCCGGa--CCCCCgCGaa-CGGuu -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 117936 | 0.66 | 0.466717 |
Target: 5'- gGCUGCGGCCcgUGcgcgcucgcugcuacGGGcGCGCUcgcUGCCAu -3' miRNA: 3'- gUGGCGCCGG--AC---------------CCC-CGCGA---ACGGUu -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 81373 | 0.68 | 0.347201 |
Target: 5'- gCGCCG-GGCucgCUGGGGGCGCcggGCUc- -3' miRNA: 3'- -GUGGCgCCG---GACCCCCGCGaa-CGGuu -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 74280 | 0.66 | 0.46311 |
Target: 5'- -uCCGCGGCggGcGGGGCGgUcGCCGc -3' miRNA: 3'- guGGCGCCGgaC-CCCCGCgAaCGGUu -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 51926 | 0.68 | 0.347201 |
Target: 5'- gGCCGCGGCCUGGuccCGCUcgucGCCGg -3' miRNA: 3'- gUGGCGCCGGACCcccGCGAa---CGGUu -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 89090 | 0.68 | 0.354762 |
Target: 5'- gGCUGCGGCCcGGGcGCGCUgGCg-- -3' miRNA: 3'- gUGGCGCCGGaCCCcCGCGAaCGguu -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 58289 | 0.67 | 0.374958 |
Target: 5'- gGCCgGCGcGCCgGGGGGCGCggggagggggcgGCCc- -3' miRNA: 3'- gUGG-CGC-CGGaCCCCCGCGaa----------CGGuu -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 65531 | 0.67 | 0.378134 |
Target: 5'- cCAgCGCGGCCgcgcGGGcagcaGCGCgUGCCAGg -3' miRNA: 3'- -GUgGCGCCGGa---CCCc----CGCGaACGGUU- -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 81343 | 0.67 | 0.386151 |
Target: 5'- gGCCGuCGGCggGGcGGGgGCUUGCgGGg -3' miRNA: 3'- gUGGC-GCCGgaCC-CCCgCGAACGgUU- -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 38604 | 0.67 | 0.39428 |
Target: 5'- -cCCGCGG-CUGGcGGGUGUUgGCCGc -3' miRNA: 3'- guGGCGCCgGACC-CCCGCGAaCGGUu -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 20272 | 0.66 | 0.419319 |
Target: 5'- aACCGCcgGGUCgugucgcgGGGGcGCGCUUGCg-- -3' miRNA: 3'- gUGGCG--CCGGa-------CCCC-CGCGAACGguu -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 88028 | 0.66 | 0.425299 |
Target: 5'- gGCCgGCGguGCCUGGGGGCGguccagucacgcgcCUgcgccgGCCGAg -3' miRNA: 3'- gUGG-CGC--CGGACCCCCGC--------------GAa-----CGGUU- -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 97676 | 0.66 | 0.427877 |
Target: 5'- -uCCGCggGGCUUGGGcGGgGC-UGCCGGg -3' miRNA: 3'- guGGCG--CCGGACCC-CCgCGaACGGUU- -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 48327 | 0.66 | 0.427877 |
Target: 5'- -nCCG-GGCUcGGGGGCGCgcgcggcgagGCCGAg -3' miRNA: 3'- guGGCgCCGGaCCCCCGCGaa--------CGGUU- -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 83848 | 0.66 | 0.436538 |
Target: 5'- gGCCGCGGCCccgcUGGgcuGGGC-CggGCCGGa -3' miRNA: 3'- gUGGCGCCGG----ACC---CCCGcGaaCGGUU- -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 126937 | 0.66 | 0.445299 |
Target: 5'- gCAgCGCGGCCa-GGGGCGCcggGCgCGGg -3' miRNA: 3'- -GUgGCGCCGGacCCCCGCGaa-CG-GUU- -5' |
|||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 133847 | 0.66 | 0.454157 |
Target: 5'- gCGCCGUGGCC-GGcGcGCGCgacUGCCGc -3' miRNA: 3'- -GUGGCGCCGGaCCcC-CGCGa--ACGGUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home