miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 1500 0.66 0.436538
Target:  5'- cCGCCGCGGCC-GGcagcucgucGGGCGCcaGCUc- -3'
miRNA:   3'- -GUGGCGCCGGaCC---------CCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 133847 0.66 0.454157
Target:  5'- gCGCCGUGGCC-GGcGcGCGCgacUGCCGc -3'
miRNA:   3'- -GUGGCGCCGGaCCcC-CGCGa--ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 68979 0.66 0.445299
Target:  5'- cCACCGCGGCCcuuuucGGGccGCGCgggcGCCGc -3'
miRNA:   3'- -GUGGCGCCGGa-----CCCc-CGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 126937 0.66 0.445299
Target:  5'- gCAgCGCGGCCa-GGGGCGCcggGCgCGGg -3'
miRNA:   3'- -GUgGCGCCGGacCCCCGCGaa-CG-GUU- -5'
23569 3' -64.7 NC_005261.1 + 71230 0.66 0.454157
Target:  5'- gCGCaCGCGGCCcucGGcGGCGCa-GCCGAg -3'
miRNA:   3'- -GUG-GCGCCGGac-CC-CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 74836 0.66 0.427877
Target:  5'- uGCuCGCGGaCCUGGGgaggcGGCGC--GCCGGg -3'
miRNA:   3'- gUG-GCGCC-GGACCC-----CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 100525 0.66 0.427017
Target:  5'- gGCCGagGGCUUGGGggacgaaGGCGCcgggGCCGAa -3'
miRNA:   3'- gUGGCg-CCGGACCC-------CCGCGaa--CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 136645 0.66 0.419319
Target:  5'- cCACCGCGccGCCaaccgcUGGGGGCucggcgcgccGCUgcgGCCGGu -3'
miRNA:   3'- -GUGGCGC--CGG------ACCCCCG----------CGAa--CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 54701 0.66 0.419319
Target:  5'- gCACCaugGGgCUGGaGGGCGCgUGCCGc -3'
miRNA:   3'- -GUGGcg-CCgGACC-CCCGCGaACGGUu -5'
23569 3' -64.7 NC_005261.1 + 79452 0.66 0.418469
Target:  5'- gCGCgCGCuGGCCggcgcgcUGGGGGCGCUcucgGCgCGGg -3'
miRNA:   3'- -GUG-GCG-CCGG-------ACCCCCGCGAa---CG-GUU- -5'
23569 3' -64.7 NC_005261.1 + 102273 0.66 0.416772
Target:  5'- gGCCgaGCGGCCUGGccgggcucgggccuGGGCGCccGCUg- -3'
miRNA:   3'- gUGG--CGCCGGACC--------------CCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 20272 0.66 0.419319
Target:  5'- aACCGCcgGGUCgugucgcgGGGGcGCGCUUGCg-- -3'
miRNA:   3'- gUGGCG--CCGGa-------CCCC-CGCGAACGguu -5'
23569 3' -64.7 NC_005261.1 + 97676 0.66 0.427877
Target:  5'- -uCCGCggGGCUUGGGcGGgGC-UGCCGGg -3'
miRNA:   3'- guGGCG--CCGGACCC-CCgCGaACGGUU- -5'
23569 3' -64.7 NC_005261.1 + 30042 0.66 0.427877
Target:  5'- gGCCGCGGCCUGccGGcCGCg-GCCu- -3'
miRNA:   3'- gUGGCGCCGGACccCC-GCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 10019 0.66 0.427877
Target:  5'- gACCGggcgGGCCUcgcgucGGGGGCGCUcGCUc- -3'
miRNA:   3'- gUGGCg---CCGGA------CCCCCGCGAaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 88028 0.66 0.425299
Target:  5'- gGCCgGCGguGCCUGGGGGCGguccagucacgcgcCUgcgccgGCCGAg -3'
miRNA:   3'- gUGG-CGC--CGGACCCCCGC--------------GAa-----CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 100184 0.66 0.419319
Target:  5'- aCGCCGUGGCg-GcGGGGCaGCguggcgGCCAGc -3'
miRNA:   3'- -GUGGCGCCGgaC-CCCCG-CGaa----CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 74280 0.66 0.46311
Target:  5'- -uCCGCGGCggGcGGGGCGgUcGCCGc -3'
miRNA:   3'- guGGCGCCGgaC-CCCCGCgAaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 84669 0.67 0.370229
Target:  5'- gGCCGCuagugcGCCUGGGccgcGGCGCg-GCCGAa -3'
miRNA:   3'- gUGGCGc-----CGGACCC----CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 452 0.67 0.370229
Target:  5'- gCGgCGgGGCCcGGGGGCGC--GCCc- -3'
miRNA:   3'- -GUgGCgCCGGaCCCCCGCGaaCGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.