miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 30785 0.69 0.284398
Target:  5'- gGCCGCGGCggUGGaGGUGCUgggGCCGGa -3'
miRNA:   3'- gUGGCGCCGg-ACCcCCGCGAa--CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 30928 0.69 0.310451
Target:  5'- aCGCgGCGGCCUGGccgcggcGGaGUGCcUGCCGc -3'
miRNA:   3'- -GUGgCGCCGGACC-------CC-CGCGaACGGUu -5'
23569 3' -64.7 NC_005261.1 + 31003 0.71 0.215075
Target:  5'- gGCCGgGGCCaGGGgcccGGCGCcgGCCAAa -3'
miRNA:   3'- gUGGCgCCGGaCCC----CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 31096 0.71 0.210004
Target:  5'- gGCCGCGGCCgu-GGGCGCcgucGCCGg -3'
miRNA:   3'- gUGGCGCCGGaccCCCGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 31128 0.75 0.118814
Target:  5'- uGgCGCGG-CUGGGGGCGCUguucgacUGCCAc -3'
miRNA:   3'- gUgGCGCCgGACCCCCGCGA-------ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 31176 0.7 0.271722
Target:  5'- gCGCCGCGGCgCUGGcGGC-CUacUGCCGc -3'
miRNA:   3'- -GUGGCGCCG-GACCcCCGcGA--ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 31306 0.68 0.362438
Target:  5'- cCGCCGCgcggGGCCcGcGGGcGCGCUcGCCGc -3'
miRNA:   3'- -GUGGCG----CCGGaC-CCC-CGCGAaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 31659 0.69 0.284398
Target:  5'- gCGCgGCGGCCccgGGGccGGCGCgcGCCGg -3'
miRNA:   3'- -GUGgCGCCGGa--CCC--CCGCGaaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 31986 0.7 0.259503
Target:  5'- gGCgGCGGCCcGGuaGGGCGCggcgGCCGc -3'
miRNA:   3'- gUGgCGCCGGaCC--CCCGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 32127 0.66 0.419319
Target:  5'- cCACCGCGccGCCaaccgcUGGGGGCucggcgcgccGCUgcgGCCGGu -3'
miRNA:   3'- -GUGGCGC--CGG------ACCCCCG----------CGAa--CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 33322 0.73 0.160755
Target:  5'- uCACCGCGGcCCUGGaGGGCGUccggGCgCAc -3'
miRNA:   3'- -GUGGCGCC-GGACC-CCCGCGaa--CG-GUu -5'
23569 3' -64.7 NC_005261.1 + 33618 0.67 0.370229
Target:  5'- gCGgCGgGGCCcGGGGGCGC--GCCc- -3'
miRNA:   3'- -GUgGCgCCGGaCCCCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 33824 0.74 0.142007
Target:  5'- ---gGCGGCCgGGGGGCGCggGCCc- -3'
miRNA:   3'- guggCGCCGGaCCCCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 33867 0.66 0.46311
Target:  5'- gGCCgGCGGCUguucucgcGGGcGGCGCUgcgcgacgGCCGg -3'
miRNA:   3'- gUGG-CGCCGGa-------CCC-CCGCGAa-------CGGUu -5'
23569 3' -64.7 NC_005261.1 + 34086 0.67 0.410865
Target:  5'- cCGCCGCuGGCUgGaGGGGCGCccaaccUGCCc- -3'
miRNA:   3'- -GUGGCG-CCGGaC-CCCCGCGa-----ACGGuu -5'
23569 3' -64.7 NC_005261.1 + 34460 0.78 0.06596
Target:  5'- -cUCGCGGCCUGGGuGGCGCUgcUGCaCGAg -3'
miRNA:   3'- guGGCGCCGGACCC-CCGCGA--ACG-GUU- -5'
23569 3' -64.7 NC_005261.1 + 34852 0.7 0.253564
Target:  5'- gGCCGCGGCgC-GGcGGCGCgcgGCCGAg -3'
miRNA:   3'- gUGGCGCCG-GaCCcCCGCGaa-CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 34922 0.66 0.436538
Target:  5'- gGgCGCGGCCacgcgGGGGGCG---GCCGg -3'
miRNA:   3'- gUgGCGCCGGa----CCCCCGCgaaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 35119 0.71 0.22025
Target:  5'- gGCgCGCuGGCgCcGGGGGCGCUgGCCGGg -3'
miRNA:   3'- gUG-GCG-CCG-GaCCCCCGCGAaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 35304 0.66 0.454157
Target:  5'- gGCgGCGGCgCUGcgcgaagcggcGGaGGCGCUgcggGCCAGg -3'
miRNA:   3'- gUGgCGCCG-GAC-----------CC-CCGCGAa---CGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.