miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 97676 0.66 0.427877
Target:  5'- -uCCGCggGGCUUGGGcGGgGC-UGCCGGg -3'
miRNA:   3'- guGGCG--CCGGACCC-CCgCGaACGGUU- -5'
23569 3' -64.7 NC_005261.1 + 48327 0.66 0.427877
Target:  5'- -nCCG-GGCUcGGGGGCGCgcgcggcgagGCCGAg -3'
miRNA:   3'- guGGCgCCGGaCCCCCGCGaa--------CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 68979 0.66 0.445299
Target:  5'- cCACCGCGGCCcuuuucGGGccGCGCgggcGCCGc -3'
miRNA:   3'- -GUGGCGCCGGa-----CCCc-CGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 110245 0.66 0.46311
Target:  5'- gCGgCGCGGCgCccgGGGGGCuGCggGCCu- -3'
miRNA:   3'- -GUgGCGCCG-Ga--CCCCCG-CGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 133526 0.67 0.402519
Target:  5'- uCACCGUGGaCCUcucGGGGCGCgcaGCgCAGc -3'
miRNA:   3'- -GUGGCGCC-GGAc--CCCCGCGaa-CG-GUU- -5'
23569 3' -64.7 NC_005261.1 + 100184 0.66 0.419319
Target:  5'- aCGCCGUGGCg-GcGGGGCaGCguggcgGCCAGc -3'
miRNA:   3'- -GUGGCGCCGgaC-CCCCG-CGaa----CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 108186 0.66 0.427877
Target:  5'- gGCCGCGGCUcc-GGGCGCgagagcugcGCCAGc -3'
miRNA:   3'- gUGGCGCCGGaccCCCGCGaa-------CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 126070 0.66 0.46311
Target:  5'- aGCCGCccgccGGCCUcGGcGGGCGCgc-CCAu -3'
miRNA:   3'- gUGGCG-----CCGGA-CC-CCCGCGaacGGUu -5'
23569 3' -64.7 NC_005261.1 + 88028 0.66 0.425299
Target:  5'- gGCCgGCGguGCCUGGGGGCGguccagucacgcgcCUgcgccgGCCGAg -3'
miRNA:   3'- gUGG-CGC--CGGACCCCCGC--------------GAa-----CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 117936 0.66 0.466717
Target:  5'- gGCUGCGGCCcgUGcgcgcucgcugcuacGGGcGCGCUcgcUGCCAu -3'
miRNA:   3'- gUGGCGCCGG--AC---------------CCC-CGCGA---ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 98715 0.66 0.427877
Target:  5'- gGCCGgggucCGGCCuUGGGGGCaCgcgGCCGc -3'
miRNA:   3'- gUGGC-----GCCGG-ACCCCCGcGaa-CGGUu -5'
23569 3' -64.7 NC_005261.1 + 30042 0.66 0.427877
Target:  5'- gGCCGCGGCCUGccGGcCGCg-GCCu- -3'
miRNA:   3'- gUGGCGCCGGACccCC-GCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 83848 0.66 0.436538
Target:  5'- gGCCGCGGCCccgcUGGgcuGGGC-CggGCCGGa -3'
miRNA:   3'- gUGGCGCCGG----ACC---CCCGcGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 126937 0.66 0.445299
Target:  5'- gCAgCGCGGCCa-GGGGCGCcggGCgCGGg -3'
miRNA:   3'- -GUgGCGCCGGacCCCCGCGaa-CG-GUU- -5'
23569 3' -64.7 NC_005261.1 + 133847 0.66 0.454157
Target:  5'- gCGCCGUGGCC-GGcGcGCGCgacUGCCGc -3'
miRNA:   3'- -GUGGCGCCGGaCCcC-CGCGa--ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 74280 0.66 0.46311
Target:  5'- -uCCGCGGCggGcGGGGCGgUcGCCGc -3'
miRNA:   3'- guGGCGCCGgaC-CCCCGCgAaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 81343 0.67 0.386151
Target:  5'- gGCCGuCGGCggGGcGGGgGCUUGCgGGg -3'
miRNA:   3'- gUGGC-GCCGgaCC-CCCgCGAACGgUU- -5'
23569 3' -64.7 NC_005261.1 + 38604 0.67 0.39428
Target:  5'- -cCCGCGG-CUGGcGGGUGUUgGCCGc -3'
miRNA:   3'- guGGCGCCgGACC-CCCGCGAaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 34086 0.67 0.410865
Target:  5'- cCGCCGCuGGCUgGaGGGGCGCccaaccUGCCc- -3'
miRNA:   3'- -GUGGCG-CCGGaC-CCCCGCGa-----ACGGuu -5'
23569 3' -64.7 NC_005261.1 + 32127 0.66 0.419319
Target:  5'- cCACCGCGccGCCaaccgcUGGGGGCucggcgcgccGCUgcgGCCGGu -3'
miRNA:   3'- -GUGGCGC--CGG------ACCCCCG----------CGAa--CGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.