miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 118294 0.65 0.469432
Target:  5'- cCGCCGCGGgCaccGGGGcgcacuuccgcaccGCGCUgcugGCCAu -3'
miRNA:   3'- -GUGGCGCCgGa--CCCC--------------CGCGAa---CGGUu -5'
23569 3' -64.7 NC_005261.1 + 108186 0.66 0.427877
Target:  5'- gGCCGCGGCUcc-GGGCGCgagagcugcGCCAGc -3'
miRNA:   3'- gUGGCGCCGGaccCCCGCGaa-------CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 48327 0.66 0.427877
Target:  5'- -nCCG-GGCUcGGGGGCGCgcgcggcgagGCCGAg -3'
miRNA:   3'- guGGCgCCGGaCCCCCGCGaa--------CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 122380 1.05 0.000644
Target:  5'- cCACCGCGGCCUGGGGGCGCUUGCCAAg -3'
miRNA:   3'- -GUGGCGCCGGACCCCCGCGAACGGUU- -5'
23569 3' -64.7 NC_005261.1 + 74280 0.66 0.46311
Target:  5'- -uCCGCGGCggGcGGGGCGgUcGCCGc -3'
miRNA:   3'- guGGCGCCGgaC-CCCCGCgAaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 5487 0.66 0.46311
Target:  5'- --gCGCGcGCCgGGGGGUaGCUgggGCCGc -3'
miRNA:   3'- gugGCGC-CGGaCCCCCG-CGAa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 133847 0.66 0.454157
Target:  5'- gCGCCGUGGCC-GGcGcGCGCgacUGCCGc -3'
miRNA:   3'- -GUGGCGCCGGaCCcC-CGCGa--ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 71230 0.66 0.454157
Target:  5'- gCGCaCGCGGCCcucGGcGGCGCa-GCCGAg -3'
miRNA:   3'- -GUG-GCGCCGGac-CC-CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 126937 0.66 0.445299
Target:  5'- gCAgCGCGGCCa-GGGGCGCcggGCgCGGg -3'
miRNA:   3'- -GUgGCGCCGGacCCCCGCGaa-CG-GUU- -5'
23569 3' -64.7 NC_005261.1 + 37558 0.66 0.427877
Target:  5'- cCGCCGCcGCCaccGGGGUGCguccUGCCGc -3'
miRNA:   3'- -GUGGCGcCGGac-CCCCGCGa---ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 1500 0.66 0.436538
Target:  5'- cCGCCGCGGCC-GGcagcucgucGGGCGCcaGCUc- -3'
miRNA:   3'- -GUGGCGCCGGaCC---------CCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 68979 0.66 0.445299
Target:  5'- cCACCGCGGCCcuuuucGGGccGCGCgggcGCCGc -3'
miRNA:   3'- -GUGGCGCCGGa-----CCCc-CGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 117936 0.66 0.466717
Target:  5'- gGCUGCGGCCcgUGcgcgcucgcugcuacGGGcGCGCUcgcUGCCAu -3'
miRNA:   3'- gUGGCGCCGG--AC---------------CCC-CGCGA---ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 83848 0.66 0.436538
Target:  5'- gGCCGCGGCCccgcUGGgcuGGGC-CggGCCGGa -3'
miRNA:   3'- gUGGCGCCGG----ACC---CCCGcGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 126070 0.66 0.46311
Target:  5'- aGCCGCccgccGGCCUcGGcGGGCGCgc-CCAu -3'
miRNA:   3'- gUGGCG-----CCGGA-CC-CCCGCGaacGGUu -5'
23569 3' -64.7 NC_005261.1 + 118868 0.66 0.453267
Target:  5'- -cCCGCGGcCCUGGccucggccaccgcGGGCGCgcuggugGCCu- -3'
miRNA:   3'- guGGCGCC-GGACC-------------CCCGCGaa-----CGGuu -5'
23569 3' -64.7 NC_005261.1 + 34922 0.66 0.436538
Target:  5'- gGgCGCGGCCacgcgGGGGGCG---GCCGg -3'
miRNA:   3'- gUgGCGCCGGa----CCCCCGCgaaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 98715 0.66 0.427877
Target:  5'- gGCCGgggucCGGCCuUGGGGGCaCgcgGCCGc -3'
miRNA:   3'- gUGGC-----GCCGG-ACCCCCGcGaa-CGGUu -5'
23569 3' -64.7 NC_005261.1 + 110245 0.66 0.46311
Target:  5'- gCGgCGCGGCgCccgGGGGGCuGCggGCCu- -3'
miRNA:   3'- -GUgGCGCCG-Ga--CCCCCG-CGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 96846 0.66 0.459518
Target:  5'- gGCCGgGGUCgacggggggcucgGGGGGCGCggguagcgUGCgGAu -3'
miRNA:   3'- gUGGCgCCGGa------------CCCCCGCGa-------ACGgUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.