miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 118294 0.65 0.469432
Target:  5'- cCGCCGCGGgCaccGGGGcgcacuuccgcaccGCGCUgcugGCCAu -3'
miRNA:   3'- -GUGGCGCCgGa--CCCC--------------CGCGAa---CGGUu -5'
23569 3' -64.7 NC_005261.1 + 87184 0.65 0.469432
Target:  5'- cCGCCGUGguaggcGCCUccaggaacagcgccGGGuGGCGCUcGCCGAg -3'
miRNA:   3'- -GUGGCGC------CGGA--------------CCC-CCGCGAaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 136645 0.66 0.419319
Target:  5'- cCACCGCGccGCCaaccgcUGGGGGCucggcgcgccGCUgcgGCCGGu -3'
miRNA:   3'- -GUGGCGC--CGG------ACCCCCG----------CGAa--CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 23026 0.66 0.427877
Target:  5'- gCGCCGCGGaCgcacGGGCGCUggGCCGu -3'
miRNA:   3'- -GUGGCGCCgGacc-CCCGCGAa-CGGUu -5'
23569 3' -64.7 NC_005261.1 + 40416 0.66 0.427877
Target:  5'- uGCCGCcGUCUgcGGGGGCGCcgGCgGAc -3'
miRNA:   3'- gUGGCGcCGGA--CCCCCGCGaaCGgUU- -5'
23569 3' -64.7 NC_005261.1 + 67684 0.66 0.445299
Target:  5'- gCGCCcuGCGGCggGuGGGGCGCgggcGCCGc -3'
miRNA:   3'- -GUGG--CGCCGgaC-CCCCGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 79452 0.66 0.418469
Target:  5'- gCGCgCGCuGGCCggcgcgcUGGGGGCGCUcucgGCgCGGg -3'
miRNA:   3'- -GUG-GCG-CCGG-------ACCCCCGCGAa---CG-GUU- -5'
23569 3' -64.7 NC_005261.1 + 100525 0.66 0.427017
Target:  5'- gGCCGagGGCUUGGGggacgaaGGCGCcgggGCCGAa -3'
miRNA:   3'- gUGGCg-CCGGACCC-------CCGCGaa--CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 69948 0.66 0.427877
Target:  5'- -cCCGCGGCCgGGgccccgccgcgcGGGCGCaggcgcGCCAGg -3'
miRNA:   3'- guGGCGCCGGaCC------------CCCGCGaa----CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 89461 0.66 0.443539
Target:  5'- uCGCCGagcucgucgGGCCgcccgGGGGGCGCgacuacgcgcagUGCCu- -3'
miRNA:   3'- -GUGGCg--------CCGGa----CCCCCGCGa-----------ACGGuu -5'
23569 3' -64.7 NC_005261.1 + 114537 0.66 0.427877
Target:  5'- gACCGggcgGGCCUcgcgucGGGGGCGCUcGCUc- -3'
miRNA:   3'- gUGGCg---CCGGA------CCCCCGCGAaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 30727 0.66 0.445299
Target:  5'- uCGgCGCGGCCUGcGuGGCGCagcugcUGCCGc -3'
miRNA:   3'- -GUgGCGCCGGACcC-CCGCGa-----ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 101344 0.66 0.445299
Target:  5'- gCGCCuuGGCgaGGaaGGGCGCggGCCAGc -3'
miRNA:   3'- -GUGGcgCCGgaCC--CCCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 35304 0.66 0.454157
Target:  5'- gGCgGCGGCgCUGcgcgaagcggcGGaGGCGCUgcggGCCAGg -3'
miRNA:   3'- gUGgCGCCG-GAC-----------CC-CCGCGAa---CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 106017 0.66 0.436538
Target:  5'- cCGCCGCGGCC-GGcagcucgucGGGCGCcaGCUc- -3'
miRNA:   3'- -GUGGCGCCGGaCC---------CCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 28480 0.66 0.435667
Target:  5'- aCGCgGCGGCC-GGGagccgcauucgcaGGUGgUUGCCGAu -3'
miRNA:   3'- -GUGgCGCCGGaCCC-------------CCGCgAACGGUU- -5'
23569 3' -64.7 NC_005261.1 + 17178 0.66 0.441783
Target:  5'- aCACCGCGcGCCacaaccgcgacgugUGGcGGCGCUUcucccgcGCCAGc -3'
miRNA:   3'- -GUGGCGC-CGG--------------ACCcCCGCGAA-------CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 68171 0.66 0.445299
Target:  5'- gGCCGgGGCgCUGGucGCGggUGCCAc -3'
miRNA:   3'- gUGGCgCCG-GACCccCGCgaACGGUu -5'
23569 3' -64.7 NC_005261.1 + 35553 0.66 0.454157
Target:  5'- gGCCGCGGCggacgcggcgCUGGGcgccgcggaggaGGUGCUgcggGCCGc -3'
miRNA:   3'- gUGGCGCCG----------GACCC------------CCGCGAa---CGGUu -5'
23569 3' -64.7 NC_005261.1 + 102273 0.66 0.416772
Target:  5'- gGCCgaGCGGCCUGGccgggcucgggccuGGGCGCccGCUg- -3'
miRNA:   3'- gUGG--CGCCGGACC--------------CCCGCGaaCGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.